Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0407 ATGGCTCACAGCGATGCTAACATGTTAAGTGAGAAAATTTCTCCTTTTATTTTCTTGCTGATTTTCTCTTTCTTCTGCTTGCAGTTCTCCATTTCTGTTGATGCTGCCCCTGATACGATTTTTAGCGGACAAATGCTCAGACAGACAGATACCATCATATCTGCAGGTGGGAACTTTGAATTAGGCTTTTTCTCACCTGGAAACTCCCCAAGTTATTTTGTGGGGATATGGTATAAGAAAATTTCAGAGCAAACGGTGGTATGGGTTGCCAACAGAGATTACACAATAACTGGTTCCTCTCCTAGTCTTACCATCAATGACGATGGCAACCTTGTGATTTTGGATGGCAGAGTCACATACATGGTGGCTAACATTTCATTGGGCCAGAATGTCAGTGCCACACTGTTGGATTCCGGCAATCTTATATTGAGAAATGGAAACTCAAATATCTTGTGGCAGAGCTTTGATTATCCCTCTAATCATTTCCTTCCAGGTATGAAGATTGGATACAACAGAAAGACCGGAGAAGTTTGGTCATTTACATCCTGGAAAAATGCAGAGGACCCAGGCCTAGGGCCTGTTTCCCTGAAAATGGATCCTGAAACACACCAATTTGTCATCATGTGGAATTCTCAAATGGTTTGGAGTAGTGGGGTTTGGAATGGGCATGCTTTCAGTTCTGTTCCTGAAATGAGATTAGACTATATTTTCAATTACAGCTACTTTGAAGACATGAGTGAGGCATACTTCACTTATTCTTTGTATGATAATTCTATTATATCTAGATTGCTTATAGATGTGTCTGGAAACATCAAGCAGCTGACGTGGCTTGATAGATCGGGCTGGAATCTGTTCTGGTCTCAACCACAAAATTTTGAATGCGATTACTACTCTTATTGTGGTTCTTTTAGCAGCTGCAATAATCAGACCACTCCTATCTGTCAATGCTTGTATGGTTTTAGACCCAACTCTGCAGGAGATTGGATGATGAATCAATTTAGAGATGGATGTGTGAGGAAAACCTCCTTGCAGTGTGATGATCTCACTTCTGTTAATAGTGAGAAAGACAAGTTCCTCAAAATGGCTAATGTGAAGTTTCCTCAGAGCCCTCAGATTTTGGAAACACAGTCTATAGAAACATGCAAAATGACTTGCTTGAACAAGTGCTCTTGCAATGCTTACGCTCATAATGGCAGCTGTTTAATGTGGGATCAAATTCTATTGAACTTGCAACAACTTTCAAAAAAGGATCCTGATGGAAGAACACTATATCTTAAACTTGCTGCATCTGAGCTCCAAAATTCCAGAGAAAGCAAAATGCCACGGTGGGTTATTGGGATGGTGGTTGTTGCTGTACTGGTGCTTCTTTTGGCCTCCTACATCTGTTACCGACAAATGAAAAGAGTCCAAGACAGAGAGGAAATGACAACAAGCCAGGATATATTACTATATGAATTTGGTATGGGTTCAAAAGCTACTGAGAATGAGCTCAATGAGGGAAATAGGGTTGGAAAAGACAAGAACAAGGATGCTTGGTTGCCATTGTTCAGCTTTGCAAGTGTATCTGCAGCAACAGAGCACTTCTCAACTGAAAATAAGCTAGGACAAGGTGGCTTTGGACCTGTTTACAAGGGTGAACTATTTAATGGACAAGAAATAGCAGTAAAGAGGCTTTCAAGGAGCTCAGGGCAAGGGCTAGAAGAACTAAAAAATGAAACAGTGCTTTTGGCTGAACTTCAACACAGGAACCTTGTTAGACTCTTAGGCTGCTGCATAGAGCAAGGTGAAAAGATATTAATCTATGAGTACATGCCCAACAAAAGCTTGGACTCGTTCCTTTTCGATCCAAACAAAAGAGGCCAGTTAGATTGGGCAAAGCGCGTCAGTATTATTGAAGGAATTGCTCAAGGGCTTCTCTATCTCCATGAGTATTCCAGATTAAGGATAATTCACAGAGATTTGAAGGCTAGTAATATCCTACTGGATAATGACATGAACCCCAAAATATCTGATTTTGGCATGGCGAGAATGTTTGGAGGAAACGAGTCATATGCAAACACAAATCGAATTGTTGGGACCTATGGTTATATGTCCCCTGAGTATGCTTTGGAAGGCCTTTTCTCCACAAAGTCTGACGTCTTTAGCTTCGGAGTCTTGATGCTGGAGATCCTGAGTGGCAAAAAGAATACAGGCTTTTATAATAGTGACACTCTTAATCTTATTGGATATGCATGGGAACTGTGGAAAAGCGATATGGCTATAAATTTGATGGATCCCATGTTGGAAGGCCAGTCCTCTCAGTATATGCTGTTAAGGTACATCAATGTGGGACTCCTTTGTGTTGAAGAAATTGCAGCTGATAGACCAACCCTGTCGGAAGTAGTCTCAATGCTTACCAATGAACTTGCCGTTCTACCTTCTCCCAAGCACCCTGCTTTCTCAACTGTAAGGAGCATGGAAAATCCACGCTCATCCATGAGCAGGCCTGAAATTTATTCAGCAAATGGTTTGAGTATTTCAGTTATGGAAGCTCGATAG 2538 0.4113 MAHSDANMLSEKISPFIFLLIFSFFCLQFSISVDAAPDTIFSGQMLRQTDTIISAGGNFELGFFSPGNSPSYFVGIWYKKISEQTVVWVANRDYTITGSSPSLTINDDGNLVILDGRVTYMVANISLGQNVSATLLDSGNLILRNGNSNILWQSFDYPSNHFLPGMKIGYNRKTGEVWSFTSWKNAEDPGLGPVSLKMDPETHQFVIMWNSQMVWSSGVWNGHAFSSVPEMRLDYIFNYSYFEDMSEAYFTYSLYDNSIISRLLIDVSGNIKQLTWLDRSGWNLFWSQPQNFECDYYSYCGSFSSCNNQTTPICQCLYGFRPNSAGDWMMNQFRDGCVRKTSLQCDDLTSVNSEKDKFLKMANVKFPQSPQILETQSIETCKMTCLNKCSCNAYAHNGSCLMWDQILLNLQQLSKKDPDGRTLYLKLAASELQNSRESKMPRWVIGMVVVAVLVLLLASYICYRQMKRVQDREEMTTSQDILLYEFGMGSKATENELNEGNRVGKDKNKDAWLPLFSFASVSAATEHFSTENKLGQGGFGPVYKGELFNGQEIAVKRLSRSSGQGLEELKNETVLLAELQHRNLVRLLGCCIEQGEKILIYEYMPNKSLDSFLFDPNKRGQLDWAKRVSIIEGIAQGLLYLHEYSRLRIIHRDLKASNILLDNDMNPKISDFGMARMFGGNESYANTNRIVGTYGYMSPEYALEGLFSTKSDVFSFGVLMLEILSGKKNTGFYNSDTLNLIGYAWELWKSDMAINLMDPMLEGQSSQYMLLRYINVGLLCVEEIAADRPTLSEVVSMLTNELAVLPSPKHPAFSTVRSMENPRSSMSRPEIYSANGLSISVMEAR* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0407 845 Gene3D Phosphorylase Kinase; domain 1 489 603 - -
Vvi19g0407 845 CDD PAN_AP_plant 341 428 - -
Vvi19g0407 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 222 IPR036426 -
Vvi19g0407 845 ProSiteProfiles Protein kinase domain profile. 528 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0407 845 SMART ntp_6 353 427 IPR003609 -
Vvi19g0407 845 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 789 - -
Vvi19g0407 845 ProSiteProfiles PAN/Apple domain profile. 345 428 IPR003609 -
Vvi19g0407 845 Pfam PAN-like domain 352 409 IPR003609 -
Vvi19g0407 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 32 155 - -
Vvi19g0407 845 PIRSF SRK 10 845 IPR024171 GO:0004674
Vvi19g0407 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Vvi19g0407 845 CDD B_lectin 51 158 IPR001480 -
Vvi19g0407 845 Gene3D - 31 155 IPR036426 -
Vvi19g0407 845 Pfam D-mannose binding lectin 85 184 IPR001480 -
Vvi19g0407 845 FunFam Uncharacterized protein 503 603 - -
Vvi19g0407 845 ProSiteProfiles Bulb-type lectin domain profile. 37 156 IPR001480 -
Vvi19g0407 845 SMART blect_4 43 158 IPR001480 -
Vvi19g0407 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 806 - -
Vvi19g0407 845 Pfam Protein tyrosine and serine/threonine kinase 530 798 IPR001245 GO:0004672|GO:0006468
Vvi19g0407 845 SMART serkin_6 528 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0407 845 Gene3D Transferase(Phosphotransferase) domain 1 604 805 - -
Vvi19g0407 845 Pfam S-locus glycoprotein domain 215 323 IPR000858 GO:0048544
Vvi19g0407 845 CDD STKc_IRAK 534 800 - -
Vvi19g0407 845 SUPERFAMILY Protein kinase-like (PK-like) 511 831 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0407 Vvi-Chr19 4497793 4500892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0407 516 813 Receptor kinase-like Gene Family AT4G11530 60.333 1.08e-122 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0407 PK_Tyr_Ser-Thr 4.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0407 - - vvi:100260654 1699.87