Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0406 ATGTCCCCGGAGTATGTGATTGATGGGCACTTTTCTATCAAATTGGATGTCTTTAGCTTTGGTGTTCTTTTACTAGAGATTGTCAGTGGTGAAAAGAACAGAGGGTTCTCTCATCCAGATCACCACCATAACCTTCTGGGACATGCATGGCTGCTGTGGGAACAAAACAGGGCCTTGGAATTAATGGATGCATGTTTGGAAGATTCATGTGTTGCATCGCAAGTATTACGATGCATACAAGTAGGTTTACTATGTGTTCAAAACCTTCCAGCAGACAGACCAGCAATGTCATCAGTGATTTTCATGTTGGGTAACGAGGGAGCAACATTGCCTCAACCTAAACATCCTGGTTTCTTCACAGAAAGATCTTCCGTGGATACAGATACAATGTCAGGAAAGATAGAGTTACATTCAGAAAATGCAGTAACCATCTCAATGCTAAAAGGTAGATAA 453 0.415 MSPEYVIDGHFSIKLDVFSFGVLLLEIVSGEKNRGFSHPDHHHNLLGHAWLLWEQNRALELMDACLEDSCVASQVLRCIQVGLLCVQNLPADRPAMSSVIFMLGNEGATLPQPKHPGFFTERSSVDTDTMSGKIELHSENAVTISMLKGR* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0406 150 Pfam Domain of unknown function (DUF3403) 105 150 IPR021820 GO:0004674
Vvi19g0406 150 Gene3D Transferase(Phosphotransferase) domain 1 1 111 - -
Vvi19g0406 150 FunFam Uncharacterized protein 1 112 - -
Vvi19g0406 150 SUPERFAMILY Protein kinase-like (PK-like) 1 127 IPR011009 -
Vvi19g0406 150 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 149 - -
Vvi19g0406 150 Pfam Protein tyrosine and serine/threonine kinase 1 100 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0406 Vvi-Chr19 4489359 4489927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0406 1 128 Receptor kinase-like Gene Family AT4G23140 50.000 6.57e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0406 PK_Tyr_Ser-Thr 2.3e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0406 - - vvi:100260654 309.301