Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0404 ATGGAGACCCATCTTTTCTTTGCCTTCTTTTGTGCCTGGATTTGTCTCTCAGTTCCGTTGGAGTCCTGTATTCCAGCTGATTCCATAAGGATTGACCAACCCATAGGCGATGGTGAGACTTTAGTTTCCTCAGGCCAAAGCTTTGAACTAGGCTTCTTCTCTCCTGGCAGCTCCAAAAACAGGTACTTAGGAATATGGTACAAGAATACACCCCGGATAGTTGTATGGGTTGCAAACAGAAACAACCCGATCGCAGATTTGTATGGAGTTTTAACCATCTTCAACAATGGCGCACTTGTTCTTCTCAACCAGTCAAAGAGTGTAATCTGGTCTCCCAATTTGTCAAAGGTACCAGAAAATCCAGTTGCACAGCTCCTGGAGACTGGAAATCTTGTTCTCAGGGACAGTAGTAATGAAAGTTCTGAAAGCTATATATGGCAGAGCTTTGATGATCCATCAGACACAATGTTGCCAGGCATGAAGGTGGGATGGAACTTAAAGACTGGTCTACAACGAAAATTGACATCATGGAAAAGTGCTGATGACCCATCCCTTGGAGACTTCTCCTACGGATTTGATATTAATGTGCTGCCTTATGTGGTTCTCGGTGTGGGATCAAGGAAAATAGTCCGTTCCGGGCCATGGAATGGACTTGAATTCAATGGTGTTTATGTGTTGGACAACTCGGTTTACAAAGCAGTTTTTGCTGCCAACAACGATGAGGTATATGCCCTCTATGAGTGTCACAACAATAAGATCCTTTCAAGACTAACATTGAACCATTCAGGTTTCATCCAGCGTCTGGTATTAAAAAAAGGGAGCTCTGAATGGGATGAATTGTACTCAATTCCCGGTGAACTTTGTGAAAATTATGGCCATTGTGGTGCTAATGGTATCTGCAGAATTGGCAAGCTGCAGACTTGTGAGTGTTTGACGGGTTTCACACCAAAATCACAAGAAGAATGGGACATGTTTAATACATCAAGTGGATGCACACGAAGAATGCCTTTGGATTGCCAAATTGAAAAGGGATTTGTAAAGGTTACAGGAGTGAAATTGCCCGACTTGATAGACTTTCATGTGATTATGGATGTGAGCCTTAGGGAATGCAGGGTATCGTGCTTGAACAATTGTTCTTGTACAGCATATTCCTACTCAAAAGCATATGCCTACTCAAATCCTAATGGAAACGGTGGCTGTTTGATGTGGTCTGGGGACCTGATTGATATCAGAGAGTTAACTTCAGAAAAACATGCGGAGGACATCTATATCCGCATGCACACTTCAGAGCTGGGGTTAAACACTTATCAGAAGAAAAAACTAGTGATCATCCTTGTTATATCTACCTTTTCTGGAATCCTCACCTTGGGCTTAGCAGTCTGGTTTCTATTTCGGAAGAAGAGAACAATGAGAACAGATCAGGAAAGCAAGAAGGAGAATTTAGAGTTACCTTTGTTTGACTTGCCCACCATTGCAACTGCTACTAAAAACTTCTCCAACACCAATATGATTGGAGCAGGTGGCTTTGGGTCTGTGTACAAGGGCAATCTATCCGGAGTAGCAGTAGCAGTGAAGAGATTGTCCAAGAATTCAGCACAGGGTGTGCAAGAGTTCAAGAATGAAGTTGTTTTGATTGCGAAACTTCAGCACAAGAATCTTGTCAGGCTTTTGGGCTGCTGCATTCAAGGAGAAGAAAGAATATTACTCTATGAATATATGCCCAACAAAAGCTTGGATTATTTTATTTTCGGTTTGAGCTTCTTATCCCTATCTATGTATTGTGCAGATCAAATCAGAAGAGCATTATTGGCATGGGATAAGCGCTGCAAGATTGTTACAGGGATAGCACGAGGGCTTCTCTACCTCCATCAAGACTCTAGATTTCAAATTATTCACAGGGATCTCAAGACGAGCAATATTTTACTGGATGACAATCTCAATCCTAAAATTTCAGACTTTGGCTTGGCAAGAATTTTTGGAGAGAATGAAATGGAAACGAGAACAAAGAGAATTGTTGGGACTTAG 2025 0.4188 METHLFFAFFCAWICLSVPLESCIPADSIRIDQPIGDGETLVSSGQSFELGFFSPGSSKNRYLGIWYKNTPRIVVWVANRNNPIADLYGVLTIFNNGALVLLNQSKSVIWSPNLSKVPENPVAQLLETGNLVLRDSSNESSESYIWQSFDDPSDTMLPGMKVGWNLKTGLQRKLTSWKSADDPSLGDFSYGFDINVLPYVVLGVGSRKIVRSGPWNGLEFNGVYVLDNSVYKAVFAANNDEVYALYECHNNKILSRLTLNHSGFIQRLVLKKGSSEWDELYSIPGELCENYGHCGANGICRIGKLQTCECLTGFTPKSQEEWDMFNTSSGCTRRMPLDCQIEKGFVKVTGVKLPDLIDFHVIMDVSLRECRVSCLNNCSCTAYSYSKAYAYSNPNGNGGCLMWSGDLIDIRELTSEKHAEDIYIRMHTSELGLNTYQKKKLVIILVISTFSGILTLGLAVWFLFRKKRTMRTDQESKKENLELPLFDLPTIATATKNFSNTNMIGAGGFGSVYKGNLSGVAVAVKRLSKNSAQGVQEFKNEVVLIAKLQHKNLVRLLGCCIQGEERILLYEYMPNKSLDYFIFGLSFLSLSMYCADQIRRALLAWDKRCKIVTGIARGLLYLHQDSRFQIIHRDLKTSNILLDDNLNPKISDFGLARIFGENEMETRTKRIVGT* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0404 674 Gene3D Phosphorylase Kinase; domain 1 471 572 - -
Vvi19g0404 674 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 463 572 - -
Vvi19g0404 674 SMART serkin_6 498 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0404 674 SMART blect_4 32 152 IPR001480 -
Vvi19g0404 674 SUPERFAMILY Protein kinase-like (PK-like) 474 674 IPR011009 -
Vvi19g0404 674 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 149 - -
Vvi19g0404 674 SUPERFAMILY Hairpin loop containing domain-like 342 423 - -
Vvi19g0404 674 CDD PAN_AP_plant 336 425 - -
Vvi19g0404 674 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 666 - -
Vvi19g0404 674 FunFam Os07g0541700 protein 573 674 - -
Vvi19g0404 674 ProSiteProfiles PAN/Apple domain profile. 339 427 IPR003609 -
Vvi19g0404 674 Gene3D Transferase(Phosphotransferase) domain 1 573 674 - -
Vvi19g0404 674 Pfam S-locus glycoprotein domain 211 318 IPR000858 GO:0048544
Vvi19g0404 674 SMART ntp_6 340 426 IPR003609 -
Vvi19g0404 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Vvi19g0404 674 Pfam PAN-like domain 339 410 IPR003609 -
Vvi19g0404 674 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
Vvi19g0404 674 ProSiteProfiles Bulb-type lectin domain profile. 26 146 IPR001480 -
Vvi19g0404 674 ProSitePatterns Protein kinases ATP-binding region signature. 504 525 IPR017441 GO:0005524
Vvi19g0404 674 CDD B_lectin 32 152 IPR001480 -
Vvi19g0404 674 Gene3D - 24 149 IPR036426 -
Vvi19g0404 674 Pfam Protein kinase domain 500 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0404 674 Pfam D-mannose binding lectin 74 178 IPR001480 -
Vvi19g0404 674 ProSiteProfiles Protein kinase domain profile. 498 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0404 Vvi-Chr19 4470666 4473328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0404 441 674 Receptor kinase-like Gene Family AT4G23190 51.681 1.40e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0404 Pkinase 4.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0404 - - vvi:100260654 1287.32