Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0403 ATGGAGACCCATCTTTTCTTCGCCTTCTTTTGTGCCTGGATTTGTCTCTCAGTTCCCTTGGAGTTCTGTATTGCAGCTGATTCCATAAGGATGCACCAATCCATAAGCAATGGTGAGACTTTAGTTTCCTCAGGCCAAAGCTTTGAACTAGGCTTCTTCTCTCCTGGAAACTCCAATAATTGGTACTTAGGAATATGGTACAAGAATACACCCCAGACAGTTGTATGGGTTGCCAACAGAAACAACCCCATCACAGATTCTTACCGAGTTTTAACCATCATCAACAATGGCCTTGTTCTTCTCAACCGGACAAAGAGTGTAATCTGGTCTCCCAATTTATCAAGGGTACCAGAAAATCCAGTTGCACAGCTCCTGGAGACTGGAAATCTTGTTCTTAGGGACAACAGTAATGAGAGTTCTAAAAGCTATATATGGCAGAGCTTTGATCATCCATCAGACACACTGTTGCCAGGCATGAAGATGGGAAGGAACTTAAAGACTGGTGTACAACGAAATTTGACATCATGGAGAAGTGCAGATGATCCATCCCTTGGAGACTTCTCTCTCAGAATCGATATTAGTGTGCTGCCTTATTTTGTTCTTGGTACGGGATCGAGCAAAAAAGTCCGATCTGGGCCATGGAATGGATTTGAATTCAATGGTCTTCCTGCGTTGAAAAACGAGGTTTTCAAATCAGTTTTTGTTTACAAAGAGGATGAGGTATATGCGTTCTATAAGTCTCACAACAATGCGGTTTTTACAAAACTAACATTGAACCATTCAGGTTTCGTCCAGCGTCTTCTATTGAAAAAAGGGAGCTCTGAATGGGATGAATTGTACTCGATACCTAATGAACTTTGTGAAAATTATGGGCGGTGTGGTGCTAATAGTATTTGCAGAATGGGCAAGTTGCAGATTTGTGAATGTTTGACGGGTTTCACACCGGAATCAGAAGAAGAATGGAACATGTTTAATACATCTGGTGGATGCACACGAAGAATGCCTTTAGCTTGCCAAAGTGAAGAGGGATTTGTAAAGGTAACTGGGGTGAAATTGCCGGACTTGATAGATTTTCATGTGATTATGAGTGTGAGCCTTGGGGAGTGTAAGGCGTTGTGCTTGAACAACTGTTCTTGTACAGCATATGCCTACTCAAATCTTAATGGAAGCAGTGGCTGTTTGATGTGGTCCGGGAACCTGATTGATATCAGAGAGTTAAGTACAGAAACAAATAAGGAGGACATCTATATCCGCGGGCACACTTCCGAGCCAGGGAAATCTGGGGAAATAGATACTTCATTCTTGTCACCGTCTGTTCCAGAGTCACACACTAATCAGAAGACCAAAAAAATAGTGATCATCCTTGTTATATCCAACTATTTTGGAATCCTCACCTTGGGCTTAGCAGTCTGGTTTCTATTTCTGAAGAAGAGAACAATGGGAACAGAGTTACCTTTGTTTGACTTGCCTACCGTTGCAACTGCTACTGACAACTTCTCCAACACCAATATGATTGGAGCAGGTGGCTTTGGGCCTGTGTACAAGGGCAATCTACCAGAAGGAGTAGCAGTAGCAGTGAAGAGATTGTCCAAGAATTCAGCACAGGGTGTGCAAGAGTTCAATAGTGAAGTTGCTTTGATGGCGAAACTTCAGCACAAGAATCTTGTCAGGCTTTTGGGCTGCTGCGTTCAAGGAGAAGAAAGAATATTACTCTACGAATATATGCCCAACAAAAGCTTGGATTATTTTATTTTCGGTTTGAGCTCCGTATCCTTATCTGTTTGGATTAGTTTCACTTTTTGGTCACCCATATTATGCTCAGTCGTGTTCAGCTCAATTCACACATCTAATGGCTATATGTCCCCTGAGTATGTGATTGATGGGCACTTTTCTATCAAATCAGATGTCTTTAGCTTTGGTGTTCTTTTACTAGAGATTGTGAGTGGTAAAAAAAACAGAGGGTTCTCTCATCCATATCACCACCACAACCTTCTGGGACATGCATGGCTGCTGTGGGAACAAAACAAGGCCTTGGAATTAATGGATGCATGTTTGGAAGATTCATGTGTTGCATCACAGGTATTACGATGCATACAAGTAGGTTTACTATGTGTTCAGAACCTTCCAGCAGACAGACCAGCAATGTCATCAGTGATTTTCATGTTGGGTAATGAGGGAGCAACATTGCCTCAACCTAAACATCCTGGTTTCTTCACGGAAAGAAGTTCAGTGGATACAGATACAATGTCAGGAAAGATAGAGTTACATTCAGAAAATGAAGTAACCATCTCAAAGCTAAAAGGTAGATGGAGAATTCAAACATCTGCTTAG 2331 0.4183 METHLFFAFFCAWICLSVPLEFCIAADSIRMHQSISNGETLVSSGQSFELGFFSPGNSNNWYLGIWYKNTPQTVVWVANRNNPITDSYRVLTIINNGLVLLNRTKSVIWSPNLSRVPENPVAQLLETGNLVLRDNSNESSKSYIWQSFDHPSDTLLPGMKMGRNLKTGVQRNLTSWRSADDPSLGDFSLRIDISVLPYFVLGTGSSKKVRSGPWNGFEFNGLPALKNEVFKSVFVYKEDEVYAFYKSHNNAVFTKLTLNHSGFVQRLLLKKGSSEWDELYSIPNELCENYGRCGANSICRMGKLQICECLTGFTPESEEEWNMFNTSGGCTRRMPLACQSEEGFVKVTGVKLPDLIDFHVIMSVSLGECKALCLNNCSCTAYAYSNLNGSSGCLMWSGNLIDIRELSTETNKEDIYIRGHTSEPGKSGEIDTSFLSPSVPESHTNQKTKKIVIILVISNYFGILTLGLAVWFLFLKKRTMGTELPLFDLPTVATATDNFSNTNMIGAGGFGPVYKGNLPEGVAVAVKRLSKNSAQGVQEFNSEVALMAKLQHKNLVRLLGCCVQGEERILLYEYMPNKSLDYFIFGLSSVSLSVWISFTFWSPILCSVVFSSIHTSNGYMSPEYVIDGHFSIKSDVFSFGVLLLEIVSGKKNRGFSHPYHHHNLLGHAWLLWEQNKALELMDACLEDSCVASQVLRCIQVGLLCVQNLPADRPAMSSVIFMLGNEGATLPQPKHPGFFTERSSVDTDTMSGKIELHSENEVTISKLKGRWRIQTSA* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0403 776 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 713 - -
Vvi19g0403 776 FunFam Uncharacterized protein 620 731 - -
Vvi19g0403 776 Pfam S-locus glycoprotein domain 210 316 IPR000858 GO:0048544
Vvi19g0403 776 FunFam - 335 419 - -
Vvi19g0403 776 PIRSF SRK 607 769 IPR024171 GO:0004674
Vvi19g0403 776 PIRSF SRK 1 595 IPR024171 GO:0004674
Vvi19g0403 776 Gene3D Hepatocyte Growth Factor 335 419 - -
Vvi19g0403 776 CDD PAN_AP_plant 335 418 - -
Vvi19g0403 776 Gene3D - 23 148 IPR036426 -
Vvi19g0403 776 ProSiteProfiles PAN/Apple domain profile. 338 420 IPR003609 -
Vvi19g0403 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 474 574 - -
Vvi19g0403 776 MobiDBLite consensus disorder prediction 426 442 - -
Vvi19g0403 776 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 182 IPR036426 -
Vvi19g0403 776 CDD B_lectin 33 151 IPR001480 -
Vvi19g0403 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 148 - -
Vvi19g0403 776 SMART blect_4 32 151 IPR001480 -
Vvi19g0403 776 Pfam PAN-like domain 338 403 IPR003609 -
Vvi19g0403 776 Pfam D-mannose binding lectin 73 177 IPR001480 -
Vvi19g0403 776 SUPERFAMILY Protein kinase-like (PK-like) 483 744 IPR011009 -
Vvi19g0403 776 SUPERFAMILY Hairpin loop containing domain-like 341 416 - -
Vvi19g0403 776 Gene3D Transferase(Phosphotransferase) domain 1 589 729 - -
Vvi19g0403 776 ProSiteProfiles Protein kinase domain profile. 499 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0403 776 Pfam Protein tyrosine and serine/threonine kinase 502 584 IPR001245 GO:0004672|GO:0006468
Vvi19g0403 776 Pfam Protein tyrosine and serine/threonine kinase 618 718 IPR001245 GO:0004672|GO:0006468
Vvi19g0403 776 Pfam Domain of unknown function (DUF3403) 724 769 IPR021820 GO:0004674
Vvi19g0403 776 SMART ntp_6 339 419 IPR003609 -
Vvi19g0403 776 MobiDBLite consensus disorder prediction 418 442 - -
Vvi19g0403 776 ProSiteProfiles Bulb-type lectin domain profile. 26 145 IPR001480 -
Vvi19g0403 776 Gene3D Phosphorylase Kinase; domain 1 474 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0403 Vvi-Chr19 4465676 4469011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0403 487 761 Receptor kinase-like Gene Family AT4G11480 43.077 8.71e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0403 PK_Tyr_Ser-Thr 1.2e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0403 - - vvi:100255581 1491.86