Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0401 ATGGAGATAGATCCTACAAAACATGGGATTCTGAATTGGAAGACACGGGTTCACATCATTGAAGGGGTTGCTCAGGGACTTCTTTATCTGCATCAGTACTCCAGATTGAGGATTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTGGATAAGGATATGAATCCTAAAATATCAAATTTTGGAATGGCAAGAATTTTTGGAGGCAATGAATCAAAAGCAACAAAACATATAGTTGGGACTTATGGCTATATGTCCCCTGAGTATGCTTTGGAAGGTCTTTTCTCCACTAAATCTGATGTCTTTAGCTTTGGGGTCTTGTTACTGGAGATTTTGAGTGGCAAGAAGAATACTGGATTTTACCAAACCGACTCGCTCAATCTTCTTGGATATGCATGGGATCTGTGGAAAGACAGCAGGGGCCAGGAGTTGATGGATCCAGGGTTGGAAGAGACATTACCAACACACATTCTGTTGAGGTACATCAATGTAGGCCTTCTTTGTGTTCAAGAAAGTGCAGATGATAGACCTACCATGTCTGATGTTGTCTCAATGCTTGGCAATGAAAGTGTACGTTTACCTTCTCCAAAACAACCGGCATTTTCAAATCTGAGAAGTGGGGTGGAACCACATATATCCCAAAACAGGCCTCAGATTTGTTCCTTAAATGGTGTTACACTTTCAGTTATGGAAGCACGATAG 702 0.4117 MEIDPTKHGILNWKTRVHIIEGVAQGLLYLHQYSRLRIIHRDLKASNILLDKDMNPKISNFGMARIFGGNESKATKHIVGTYGYMSPEYALEGLFSTKSDVFSFGVLLLEILSGKKNTGFYQTDSLNLLGYAWDLWKDSRGQELMDPGLEETLPTHILLRYINVGLLCVQESADDRPTMSDVVSMLGNESVRLPSPKQPAFSNLRSGVEPHISQNRPQICSLNGVTLSVMEAR* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0401 233 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 233 - -
Vvi19g0401 233 Pfam Protein tyrosine and serine/threonine kinase 10 186 IPR001245 GO:0004672|GO:0006468
Vvi19g0401 233 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 194 - -
Vvi19g0401 233 Gene3D Transferase(Phosphotransferase) domain 1 4 195 - -
Vvi19g0401 233 SMART serkin_6 1 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0401 233 SUPERFAMILY Protein kinase-like (PK-like) 6 212 IPR011009 -
Vvi19g0401 233 ProSiteProfiles Protein kinase domain profile. 1 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0401 233 ProSitePatterns Serine/Threonine protein kinases active-site signature. 38 50 IPR008271 GO:0004672|GO:0006468
Vvi19g0401 233 Pfam Domain of unknown function (DUF3403) 188 233 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0401 Vvi-Chr19 4454264 4455306 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0401 3 201 Receptor kinase-like Gene Family AT4G23250 57.426 3.37e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0401 PK_Tyr_Ser-Thr 8.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0401 - - vvi:100267572 466.077