Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0400 ATGAAACTTGGATATGACAAAAGGGCTGGAAAAACATGGTCACTGGTGTCATGGAAGAGCAGAGACGATCCCAGTCCAGGAGCTTTCTCCATAGAACACGATGCGAATGAAAGTAGTCAGATTTTTAATCTGCAAGGACCCAAAATGTATTGGACTAGTGGGGTGTGGAATGGGCAGATTTTCAGCCAGGTTCCTGAGATGCGTTTGTCCGACATGTATAAGTACAATGCATCCTTTAATGAGAATGAAAGCTATTTGACTTACTCTCTTCGTTATCCCTCCATTCTGAGCAGAGTGGTGCTAGATGTGTCAGGCCAGGTTAGGAAACTGAATTGGCATGAAGGCACACATGAATGGGATTTATTTTGGCTTCAACCAAAAACACAGTGTGAGGTTTATGCTTACTGTGGGCCTTTCGGAACCTGCACTCGGGATTCTGTTGAATTTTGTGAATGCTTGCCAGGTTTTGAACCTCGCTTCCCTGAAGACTGGAATCTGCAAGACAGATCTGGAGGGTGTGTGAGGAAAGCAGATTTGGAGTGTGTCAATGAAAGCCATGCTAATGGGGAGCGAGACCAGTTTCTTTTGGTGTCTAACGTGAGACTGCCCAAGTATCCAGTAACACTGCAAGCAAGGAGTGCTATGGAGTGCGAATCAATTTGCCTGAATCGCTGCTCTTGCTCTGCTTATGCTTATGAGGGAGAGTGTAGAATATGGGGTGGAGATCTTGTAAACGTGGAGCAGCTACCAGATGGTGACAGTAATGCTAGAAGTTTCTATATCAAACTTGCTGCCTCTGAGCTAAATAAGAGAGTTTCAAGCAGCAAGTGGAAGGTATGGCTAATTATTACACTGGCCATATCTTTAACTTCAGCCTTTGTCATTTATGGGATATGGGGAAAGTTCCGAAGAAAAGGGGAAGATTTGTTAGTATTTGATTTCGGTAACAGCTCAGAAGATACCAGCTGCTATGAGCTTGGCGAGACAAATAGACTTTGGAGGGGCGAGAAGAAGGAAGTTGATTTGCCCATGTTCAGTTTTGTGAGTGTATCTGCTTCTACAAATAACTTTTGTATTGAAAATAAACTAGGAGAGGGCGGTTTTGGATCTGTTTACAAGGGAAAGTCACAAAGAGGATATGAGGTAGCTGTGAAAAGGCTCTCAAAAAGATCTAAACAGGGATGGGAGGAGTTAAAAAATGAAGCCATGCTTATAGCCAAGCTGCAACACAAGAATCTTGTGAAAGTTTTGGGATACTGCATCGAGCGAGATGAGAAGATATTGATTTATGAGTATATGTCCAACAAAAGCTTGGATTTCTTCCTCTTTGATCCAGCAAAACGCGGGATTCTGAATTGGGAGACGCGAGTTCGCATCATTGAAGGGGTTGCTCAGGGACTTCTTTATCTCCATCAGTACTCCAGATTGAGAGTTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTGGATAAAGACATGAACCCTAAAATATCAGATTTTGGAATGGCAAGAATTTTTGGAGGAAATGAATCAAAAGCAACAAAACATATAGTTGGGACTTATGGCTATATGTCCCCCGAGTATGTTTTGCGAGGTCTCTTTTCAACTAAATCTGATGTTTTTAGCTTCGGGGTCTTGTTACTAGAGATTCTAAGTGGCAAGAAGATTACCGAATTTTATCATAGTGACTCACTCAATCTTCTTGGATATGCATGGGATCTGTGGAAAAACAACAGAGGACAGGAGTTGATTGATCCAGTACCGAATGAGATATCTTCGAGACATATTCTGTTAAGGTACATCAATGTAGCCCTTCTCTGTGTTCAAGAAAATGCAGATGATAGACCCACGATGTCCGATGTTGTCTCCATGCTTGGTAGGGAAAATGTACTTTTATCTTCTCCAAATGAGCCGGCATTCTCATATCTAAGGGGCGTGAAACCACATGCATCTCAAGAGAGGCCTGAAATTTGTTCCTTAAATGATGTAACACTTTCAAGCATGGGAGCACGATAA 2019 0.4225 MKLGYDKRAGKTWSLVSWKSRDDPSPGAFSIEHDANESSQIFNLQGPKMYWTSGVWNGQIFSQVPEMRLSDMYKYNASFNENESYLTYSLRYPSILSRVVLDVSGQVRKLNWHEGTHEWDLFWLQPKTQCEVYAYCGPFGTCTRDSVEFCECLPGFEPRFPEDWNLQDRSGGCVRKADLECVNESHANGERDQFLLVSNVRLPKYPVTLQARSAMECESICLNRCSCSAYAYEGECRIWGGDLVNVEQLPDGDSNARSFYIKLAASELNKRVSSSKWKVWLIITLAISLTSAFVIYGIWGKFRRKGEDLLVFDFGNSSEDTSCYELGETNRLWRGEKKEVDLPMFSFVSVSASTNNFCIENKLGEGGFGSVYKGKSQRGYEVAVKRLSKRSKQGWEELKNEAMLIAKLQHKNLVKVLGYCIERDEKILIYEYMSNKSLDFFLFDPAKRGILNWETRVRIIEGVAQGLLYLHQYSRLRVIHRDLKASNILLDKDMNPKISDFGMARIFGGNESKATKHIVGTYGYMSPEYVLRGLFSTKSDVFSFGVLLLEILSGKKITEFYHSDSLNLLGYAWDLWKNNRGQELIDPVPNEISSRHILLRYINVALLCVQENADDRPTMSDVVSMLGRENVLLSSPNEPAFSYLRGVKPHASQERPEICSLNDVTLSSMGAR* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0400 672 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 85 648 - -
Vvi19g0400 672 ProSiteProfiles Protein kinase domain profile. 357 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0400 672 Pfam PAN-like domain 189 246 IPR003609 -
Vvi19g0400 672 SMART ntp_6 189 263 IPR003609 -
Vvi19g0400 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vvi19g0400 672 Gene3D Phosphorylase Kinase; domain 1 333 432 - -
Vvi19g0400 672 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Vvi19g0400 672 Pfam S-locus glycoprotein domain 51 159 IPR000858 GO:0048544
Vvi19g0400 672 SUPERFAMILY Protein kinase-like (PK-like) 341 639 IPR011009 -
Vvi19g0400 672 Gene3D Transferase(Phosphotransferase) domain 1 433 635 - -
Vvi19g0400 672 CDD STKc_IRAK 363 628 - -
Vvi19g0400 672 SMART serkin_6 357 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0400 672 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 433 634 - -
Vvi19g0400 672 CDD PAN_AP_plant 178 264 - -
Vvi19g0400 672 FunFam Uncharacterized protein 332 432 - -
Vvi19g0400 672 Pfam Protein kinase domain 360 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0400 672 ProSiteProfiles PAN/Apple domain profile. 181 264 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0400 Vvi-Chr19 4430733 4433652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0400 345 672 Receptor kinase-like Gene Family AT4G11530 54.896 8.29e-118 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0400 Pkinase 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0400 - - vri:117909111 1312.75