Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0398 ATGGGTAACATGAAAATTTCAACCAGAAGGTGGTCTGCTAATCTCGTTTTCTTGCTTATTTCTTCAGGTTTTCACTTGCAATTTGTTGATGCATTTACAGATACAATCTTACAAGGTCAATCACTCATAACCTCTCAGACCATCATATCTGCTGGTGGTAACTTTGAATTAGGATTCTTTTCTCCTGGAAAGTCCACAAAATATTATGTGGGGATATGGTACAAGAAAATCTCAGAGCAAACCATTGTGTGGGTAGCTAACCGAGACTATCCATTCACAAATCCGTCCGTGGTTCTTACTGTCAGCACAGATGGCAACCTCGAGATTTTGGAGGGGAAGTTTTCGTACAAGGTGACAAGCATATCATCAAGCAGCAACACTAGTGCCACCCTGTTGGATTCTGGAAATCTTGTTTTGAGAAATAAGAGGTCAGATGTCTTATGGGAGAGCTTTGACTATCCATCGGACACGCTCCTGCCCGGAATGAAACTTGGATATGACAAAAGGGCTGGAAAAACATGGTCAATGGTGTCATGGAAGAGCGCAGAAGATCCCAGTCCAGGAGATTTCTCCGTGCAGGTCGACCCTAATGGAACTAGCCAGTTTTTTAGCCAGCAAGGACCCAACAGGTATTGGACTAGTGGGGTGTGGGATGGGCAGATTTTCGGCCAGGTTCCTGAGATGCGTTTCTTCTATATGTATAAGTACAATACATCCTTTAATGAGAATGAAAGCTATTTTACTTACTCTCTTAATAATCCCTCCATTCTGAGCAGAGTGGTGCTAGATGTGTCGGGCCAGATTAGGCATCTGAATTGTCAAGAAGGCACACATGAATGGGATTTATCTTGGCTTCATCCAAGAACACAGTGTGAGGTTTATGTCTATTGTGGGCCTTTCGGAATCTGCACTGGGGATTCTGTTGAATTTTGTGAATGCTTGCCAGGTTTTGAACCTCGCTTCCTTGAAGACTGGAATCTGCAAGACAGATCTGGAGGGTGTGTGAGGAAAGCAGATTTGGAGTGTGTCAATGAAAGCCATGCTAATGGGGAGCGAGACCAGTTTCTTTTGGTGTCTAACGTGAGACTGCCCAAGTATCCAGTAACAATACAAGCAAGGAGTGCTATGGAGTGCGAATCAATTTGCCTGAATAGCTGCCCTTGCTCCGCTTATGCTTATGAGGGAGATGAGTGTAGAATATGGGGTGGAGATCTTGTAAACGTGGAGCAGCTACCAGATGGTGACAGTAATGCTAGAAGTTTCTATATCAAACTTGCTGCCTCTGAGCTAAATAAGAGAGTTTCAAGCAGCAAGTGGAAGGTATGGTTAATTGTTACACTGGCCGTATCTTTAACTTCAGTCTTTGTCAATTATGGGATATGGCGAAGGTTCCGAAGAAAAGGGGAAGATTTGTTAGTATTTGATTTCGGTAACAGCTCAGAAGATACCAGCTATGAGCTTGGCGAGACAAATAGACTTTGGAGGGGTGAGAAGAAGGAAGTTGATTTGCCCAGGTTCAGTTTTGCGAGTGCATCTGCTTCTACAAATAACTTCTCTATTGAAAATAAACTAGGAGAGGGCGGTTTTGGATCTGTTTACAAGGGAAAGTCACAAAGAGGATATGAGGTAGCTGTGAAAAGGCTCTCAAAAAGATCTAAACAGGGATGGGAGGAGTTAAAAAATGAAGTCATGCTTATAGCCAAGCTGCAACACAAGAATCTTGTGAGAGTTTTGGGATACTGCACCGAGCGGGATGAGAAGATATTGATTTATGAGTATATGTCCAACAAAAGCTTGGATTTCTTCCTCTTTGATCCTACAAAACATGGGATTCTGAATTGGAAGACACGGGTTCACATCATTGAAGGGGTTGCTCAGGGACTTCTTTATCTGCATCAGTACTCCAGATTGAGGATTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTGGATAAGGATATGAATCCTAAAATATCAGATTTTGGAATGGCAAGAATATTTGGAGGCAATGAATCAAAAGCAACAAATCATATAGTTGGGACTTACGGCTATATGTCCCCTGAGTATGCTTTGGAAGGTCTTTTCTCCACTAAATCTGATGTCTTTAGCTTTGGGGTCTTGTTATTGGAGATTTTGAGTGGCAAGAAGAATACTGGATTTTACCAAACCGACTCGCTCAATCTTCTTGGATATGTATGGGATCTGTGGAAAGATAGCAGGGGGCAGGAGTTGATGGATCCAGGATTGGAAGAGACATTGCCAACACACATTCTGTTGAGGTACATCAATGTAGGCCTTCTTTGTGTTCAAGAAAGTGCAGATGACAGGCCTACCATGTCTGATGTTGTCTCAATGCTTGGCAATGAAAGTGTACGTTTACCTTCTCCAAAACAACCGGCATTTTCAAATCTGAGAAGTGGGGTGGAACCACATATATCCCAAAACAGGCCTGAAGTTTGTTCCTTAAATGGTGTGACACTTTCAGTTATGGAAGCACGATAG 2505 0.4259 MGNMKISTRRWSANLVFLLISSGFHLQFVDAFTDTILQGQSLITSQTIISAGGNFELGFFSPGKSTKYYVGIWYKKISEQTIVWVANRDYPFTNPSVVLTVSTDGNLEILEGKFSYKVTSISSSSNTSATLLDSGNLVLRNKRSDVLWESFDYPSDTLLPGMKLGYDKRAGKTWSMVSWKSAEDPSPGDFSVQVDPNGTSQFFSQQGPNRYWTSGVWDGQIFGQVPEMRFFYMYKYNTSFNENESYFTYSLNNPSILSRVVLDVSGQIRHLNCQEGTHEWDLSWLHPRTQCEVYVYCGPFGICTGDSVEFCECLPGFEPRFLEDWNLQDRSGGCVRKADLECVNESHANGERDQFLLVSNVRLPKYPVTIQARSAMECESICLNSCPCSAYAYEGDECRIWGGDLVNVEQLPDGDSNARSFYIKLAASELNKRVSSSKWKVWLIVTLAVSLTSVFVNYGIWRRFRRKGEDLLVFDFGNSSEDTSYELGETNRLWRGEKKEVDLPRFSFASASASTNNFSIENKLGEGGFGSVYKGKSQRGYEVAVKRLSKRSKQGWEELKNEVMLIAKLQHKNLVRVLGYCTERDEKILIYEYMSNKSLDFFLFDPTKHGILNWKTRVHIIEGVAQGLLYLHQYSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGGNESKATNHIVGTYGYMSPEYALEGLFSTKSDVFSFGVLLLEILSGKKNTGFYQTDSLNLLGYVWDLWKDSRGQELMDPGLEETLPTHILLRYINVGLLCVQESADDRPTMSDVVSMLGNESVRLPSPKQPAFSNLRSGVEPHISQNRPEVCSLNGVTLSVMEAR* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0398 834 Pfam Domain of unknown function (DUF3403) 789 834 IPR021820 GO:0004674
Vvi19g0398 834 Gene3D - 26 151 IPR036426 -
Vvi19g0398 834 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524
Vvi19g0398 834 SMART serkin_6 518 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0398 834 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544
Vvi19g0398 834 SUPERFAMILY Protein kinase-like (PK-like) 502 811 IPR011009 -
Vvi19g0398 834 Pfam D-mannose binding lectin 81 180 IPR001480 -
Vvi19g0398 834 Pfam PAN-like domain 350 408 IPR003609 -
Vvi19g0398 834 ProSiteProfiles Protein kinase domain profile. 518 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0398 834 ProSiteProfiles Bulb-type lectin domain profile. 33 152 IPR001480 -
Vvi19g0398 834 CDD PAN_AP_plant 339 426 - -
Vvi19g0398 834 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 778 - -
Vvi19g0398 834 Gene3D Phosphorylase Kinase; domain 1 494 593 - -
Vvi19g0398 834 SMART blect_4 33 154 IPR001480 -
Vvi19g0398 834 ProSiteProfiles PAN/Apple domain profile. 342 426 IPR003609 -
Vvi19g0398 834 FunFam Uncharacterized protein 26 151 - -
Vvi19g0398 834 PIRSF SRK 5 834 IPR024171 GO:0004674
Vvi19g0398 834 CDD STKc_IRAK 524 787 - -
Vvi19g0398 834 Pfam Protein tyrosine and serine/threonine kinase 519 787 IPR001245 GO:0004672|GO:0006468
Vvi19g0398 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 594 684 - -
Vvi19g0398 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Vvi19g0398 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 185 IPR036426 -
Vvi19g0398 834 FunFam Uncharacterized protein 686 796 - -
Vvi19g0398 834 FunFam Uncharacterized protein 493 593 - -
Vvi19g0398 834 Gene3D Transferase(Phosphotransferase) domain 1 594 795 - -
Vvi19g0398 834 CDD B_lectin 40 154 IPR001480 -
Vvi19g0398 834 SUPERFAMILY Hairpin loop containing domain-like 352 409 - -
Vvi19g0398 834 SMART ntp_6 350 425 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0398 Vvi-Chr19 4401907 4405377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0398 495 802 Receptor kinase-like Gene Family AT4G23250 57.778 3.91e-118 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0398 PK_Tyr_Ser-Thr 3.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0398 - - vvi:100252174 1641.71