Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0397 ATGGGTAAGAGGAAGGTTCACGTCAACATTGTCGTCATTGGCCATGTCGACCATGGCAAGTTGACCACCACTGGTAATTTGATTTACAAGCTTGGAGGTATTGACAAACGTGTTATTGAGTTGTTTGAAAAAAAAGCCGCTGAAATGAATAAAAGATCATTCACGTATGCTTGGGTCTTAGATAAGCTCAAGGCTAAGCGTGAACATGGAATTACCATTGATATTGCTTTCTGGAAGTTTGGGACCACAAAGTACTACTGCACTGTTATTGAGGCTCATGGTCATTGGGATTTCATCAAGAACATGGTTACTAGCAGCTCACAGGTAGGCTGTCTTGTTCTCATTATTAATTCCACCACTGGTTGA 366 0.4126 MGKRKVHVNIVVIGHVDHGKLTTTGNLIYKLGGIDKRVIELFEKKAAEMNKRSFTYAWVLDKLKAKREHGITIDIAFWKFGTTKYYCTVIEAHGHWDFIKNMVTSSSQVGCLVLIINSTTG* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0397 121 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Vvi19g0397 121 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Vvi19g0397 121 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Vvi19g0397 121 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Vvi19g0397 121 Pfam Elongation factor Tu GTP binding domain 6 121 IPR000795 GO:0003924|GO:0005525
Vvi19g0397 121 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 121 IPR000795 GO:0003924|GO:0005525
Vvi19g0397 121 PANTHER TRANSLATION FACTOR 5 121 - -
Vvi19g0397 121 Gene3D - 1 121 IPR027417 -
Vvi19g0397 121 FunFam Elongation factor 1-alpha 1 121 - -
Vvi19g0397 121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 121 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0397 Vvi-Chr19 4374573 4374938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0397 1 121 Eukaryotic Initiation Factors Gene Family AT1G07930 80.992 3.86e-67 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0397 K03231 - dct:110113826 203.756