Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0396 ATGTATTGTGCAGATCAAAACAGAAGAGCATCATTGGCATGGGATAAGTGCTGCAAGATTGTTATGGGGGTAGCACAAGGGCTTCTCTACCTCCATCAAGACTCTAGATTTCAAATTATTCACAGGGATCTCAAGACAAGCAATATTTTACTGGATGACAATCTCAATCCTAAAATTTCAGACTTTGGCTTGGCAAGAATTTTTGGAGAGAATGAAATGGAAATGAGAACAAAGAGAATTTTTGGGACTTAG 252 0.381 MYCADQNRRASLAWDKCCKIVMGVAQGLLYLHQDSRFQIIHRDLKTSNILLDDNLNPKISDFGLARIFGENEMEMRTKRIFGT* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0396 83 FunFam Os07g0541700 protein 1 83 - -
Vvi19g0396 83 ProSiteProfiles Protein kinase domain profile. 1 83 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0396 83 ProSitePatterns Serine/Threonine protein kinases active-site signature. 39 51 IPR008271 GO:0004672|GO:0006468
Vvi19g0396 83 Pfam Protein kinase domain 8 73 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0396 83 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 83 - -
Vvi19g0396 83 Pfam Haspin like kinase domain 13 69 - -
Vvi19g0396 83 SUPERFAMILY Protein kinase-like (PK-like) 9 83 IPR011009 -
Vvi19g0396 83 Gene3D Transferase(Phosphotransferase) domain 1 2 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0396 Vvi-Chr19 4362868 4363119 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0396 5 83 Receptor kinase-like Gene Family AT4G05200 59.494 6.92e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0396 Pkinase 3.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0396 - - vvi:100260654 148.673