Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0394 ATGAAAATTTCAACCAGAAGGTGGTCTGCTAATCTTGTTTTCTTGCTTATTTCTTCAGGTTTTCACTGGCAATTTGTTGATGCATTTACAGATGCAATCTTACAAGGTCAATCACTCACAACCTCTCAGACCATCGTATCCGCTGGTGGTAACTTTGAATTAGGTTTCTTTTCTCCTGGAAAGTCCACAAAATACTATGTGGGGATATGGTACAAGAAAATCTCAGAGCAAACCATTGTGTGGGTAGCTAACCGAGACTATTCATTCACAAATCCATCCGTGGTTCTTACTGTCAGCACAGATGGCAACCTCGAGATTTTGGAGGGGAAGATTTCGTACAAGGTGACAAGCATATCATCAAACAGCAACACTAGTGCCACCCTGTTGGATTCTGGAAATCTTGTTTTGAGAAATAAGAAGTCAGATGTCTTATGGGAGAGCTTTGACTATCCATCGCACACTTACCTGCCGGGGATGAAGCTTGGGTACGACAAAAGGGCTGGAAAAACATGGTCATTGGTGTCATGGAAGAGCGCAGAAGATCCCAGTCCAGGAGATTTCTCCCTGCAGGTCGACCCTAATGGAACTAGCCAGATTTTTAGCCTGCAAGGACCCAACAGGTATTGGACTACTGGGGTGTGGGATGGGCAGATTTTCACCCAGGTTCCTGAGATGCGTTTGCCCGACATGTATAAGTGCAATATATCCTTTAATGAGAATGAAATCTATTTGACTTACTCTCTTCATAATCCCTCCATTCTGAGCAGACTGGTGCTAGATGTGTCAGGCCAGATTAGGTCTCTGAATTGGCATGAAGGCACACGTGAATGGGATTTATTTTGGCTTCAACCAAAAACACAGTGTGAGGTTTATGCTTACTGTGGGCCTTTCGGAACCTGCACTCGGGATTCTGTTGAATTTTGTGAATGCTTGCCAGGTTTTGAACCTCGCTTCCCTGAAGACTGGAATCTGCAAGACAGATCTGGAGGGTGTGTGAGGAAAGCAGATTTGCAGTGTGTCAATGAAAGCCATGCTAATGGGGAGCGAGACCAGTTTCTTTTGGTGTCTAACGTGAGACTGCCCAAGTATCCAGTAACACTGCAAGCAAGGAGTGCTATGGAGTGCGAATCAATTTGCCTGAATCGCTGCTCTTGCTCTGCTTATGCTTATAAGAGAGAGTGTAGAATATGGGCTGGAGATCTTGTAAACGTGGAGCAGCTACCAGATGGTGACAGTAATGGTAGAAGTTTCTATATCAAACTTGCTGCCTCTGAGCTAAATAAGAGAGGGGAAGATTTGTTAGTATTTGATTTCGGTAACAGCTCAGAAGATACCAGCTATGAGCTTGACGAGACAAATAGACTTTGGAGGGGCGAGAAAAGGGAAGTTGATTTGCCCATGTTCAGTTTTGCGAGTGTATCTGCTTCTACAAATAACTTCTCTATTGAAAATAAACTAGGAGAGGGCGGTTTTGGATCTGTTTACAAGGGAAAGTCACAAAGAAGATATGAAGTAGCTGTGAAAAGGCTCTCTAAAAGATCTAAACAGGGATGGGAGGAGTTAAAAAATGAAGCCATGCTTATAGCCAAGCTGCAACACAAGAATCTTGTGAAAGTTTTGGGATATTGCATCGAGAGGGATGAGAAGATATTGATTTACGAGTATATGTCCAACAAAAGCTTGGATTTCTTCCTCTTTGATCCTACAAAACATGGGATTCTAAATTGGAAGACACGAGTTCACATCATTGAAGGGGTTGCTCAGGGACTTCTTTATCTGCATCAGTACTCCAGATTGAGGATTATTCATCGAGATTTAAAGGCTAGCAACATTCTTCTGGATAAGGATATGAATCCTAAAATATCAGATTTTGGAATGGCAAGAATATTTGGAGGCAACGAATCAAAAGTAACAAATCATATAGTTGGGACTTATGGCTATATGTCCCCTGAGTATGCTTTGGAAGGTCTATTCTCCACTAAATCTGATGTCTTTAGCTTTGGGGTCTTGTTATTGGAGATTTTGAGTGGCAAGAAGAATACTGGATTTTACCAAACCGACTCGCTCAATCTTCTTGGATATGCATGGGATCTGTGGAAAGATAGTAGGGGGCTGGAGTTGATGGATCCAGGGTTGGAAGAGACATTGCCAACACACATTCTGTTGAGGTACATCAATGTAGGCCTTCTTTGTGTTCAAGAAAGTGCAGATGATAGGCCTACCATGTCTGATGTTGTCTCAATGCTTGGCAATGAAAGTGTACGTTTACCTTCTCCAAAACAACCGGCATTTTCAAATCTGAGAAGTGGGGTGGAACCACATATATCCCAAAACAGGCCTGAAGTTTGTTCCTTAAATGGTGTGACACTTTCAGTTATGGAAGCACGATAA 2391 0.4258 MKISTRRWSANLVFLLISSGFHWQFVDAFTDAILQGQSLTTSQTIVSAGGNFELGFFSPGKSTKYYVGIWYKKISEQTIVWVANRDYSFTNPSVVLTVSTDGNLEILEGKISYKVTSISSNSNTSATLLDSGNLVLRNKKSDVLWESFDYPSHTYLPGMKLGYDKRAGKTWSLVSWKSAEDPSPGDFSLQVDPNGTSQIFSLQGPNRYWTTGVWDGQIFTQVPEMRLPDMYKCNISFNENEIYLTYSLHNPSILSRLVLDVSGQIRSLNWHEGTREWDLFWLQPKTQCEVYAYCGPFGTCTRDSVEFCECLPGFEPRFPEDWNLQDRSGGCVRKADLQCVNESHANGERDQFLLVSNVRLPKYPVTLQARSAMECESICLNRCSCSAYAYKRECRIWAGDLVNVEQLPDGDSNGRSFYIKLAASELNKRGEDLLVFDFGNSSEDTSYELDETNRLWRGEKREVDLPMFSFASVSASTNNFSIENKLGEGGFGSVYKGKSQRRYEVAVKRLSKRSKQGWEELKNEAMLIAKLQHKNLVKVLGYCIERDEKILIYEYMSNKSLDFFLFDPTKHGILNWKTRVHIIEGVAQGLLYLHQYSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGGNESKVTNHIVGTYGYMSPEYALEGLFSTKSDVFSFGVLLLEILSGKKNTGFYQTDSLNLLGYAWDLWKDSRGLELMDPGLEETLPTHILLRYINVGLLCVQESADDRPTMSDVVSMLGNESVRLPSPKQPAFSNLRSGVEPHISQNRPEVCSLNGVTLSVMEAR* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0394 796 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 148 - -
Vvi19g0394 796 Pfam Protein tyrosine and serine/threonine kinase 481 749 IPR001245 GO:0004672|GO:0006468
Vvi19g0394 796 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 24 740 - -
Vvi19g0394 796 SMART ntp_6 347 421 IPR003609 -
Vvi19g0394 796 CDD B_lectin 37 151 IPR001480 -
Vvi19g0394 796 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 556 646 - -
Vvi19g0394 796 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Vvi19g0394 796 ProSitePatterns Protein kinases ATP-binding region signature. 486 508 IPR017441 GO:0005524
Vvi19g0394 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Vvi19g0394 796 Pfam Domain of unknown function (DUF3403) 751 796 IPR021820 GO:0004674
Vvi19g0394 796 ProSiteProfiles Bulb-type lectin domain profile. 30 149 IPR001480 -
Vvi19g0394 796 Gene3D Phosphorylase Kinase; domain 1 456 555 - -
Vvi19g0394 796 FunFam Uncharacterized protein 455 555 - -
Vvi19g0394 796 Gene3D - 24 148 IPR036426 -
Vvi19g0394 796 Pfam PAN-like domain 347 404 IPR003609 -
Vvi19g0394 796 CDD STKc_IRAK 486 749 - -
Vvi19g0394 796 Gene3D Transferase(Phosphotransferase) domain 1 556 758 - -
Vvi19g0394 796 Pfam D-mannose binding lectin 78 177 IPR001480 -
Vvi19g0394 796 CDD PAN_AP_plant 336 422 - -
Vvi19g0394 796 FunFam Uncharacterized protein 648 758 - -
Vvi19g0394 796 ProSiteProfiles Protein kinase domain profile. 480 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0394 796 SUPERFAMILY Protein kinase-like (PK-like) 464 773 IPR011009 -
Vvi19g0394 796 PIRSF SRK 434 796 IPR024171 GO:0004674
Vvi19g0394 796 PIRSF SRK 3 449 IPR024171 GO:0004674
Vvi19g0394 796 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Vvi19g0394 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 182 IPR036426 -
Vvi19g0394 796 SMART blect_4 36 151 IPR001480 -
Vvi19g0394 796 SMART serkin_6 480 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0394 Vvi-Chr19 4330206 4333770 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0394 433 764 Receptor kinase-like Gene Family AT4G23190 53.709 5.30e-118 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0394 PK_Tyr_Ser-Thr 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0394 - - vvi:100260532 1605.5