Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0393 ATGGGTAGCATGAAATTTTCAACGAGAAGGTGTTCTGCTAATTATCTTGTTTTCTTGCTTATTTCTTCAGGTTTTCACTGGCAATTTGCTGATGCATTTACAGATACAATCTTACAAGGTCAGTCAATCACAACCTCTCAGACCATCATATCTGCTGCTGGTAACTTTGAATTAGGATTCTTCTCGCCTGGAAACTCCACAAATTATTATGTGGGGATATGGTACAAGAAAGTCTCAAACCAAACCATTGTCTGGGTGGCTAACCGAGAGTATGCGTTCAAAAATCGGTCTGTGGTTCTTACTGTCAGGACAGATGGTAACCTCGAGGTTTGGGAGGGGAAAATTTCATACAGGGTGACAAGCATATCATCAAATAGCAAAACTAGTGCCACCCTGTTGGATTCTGGAAATCTTGTTTTGAGAAATGACAACTCGAGTATCTTATGGCAAAGCTTTGACTATCCATCGGACACTTTCTTGCCGGGGATGAAACTTGGATACGACAAAAGGGCTGGAAAAACATGGTCATTAGTGTCATGGAAGAGCTCAGAAGATCCCAGTCCAGGAGTTTTCTCCCTGAAGTACGACCCTAAGGGAACCGGCCAGATTTTTATCTTGCAAGGGTCCACAATGTACTGGGCTAGTGGCACCTGGGACAGGGATGGGCAGGTTTTCAGCTTGATTCGTGAGATGCGCTTAAACTATATGTTTAATTTCAGTTATTCGTTTAGTAAGGAGGAGAGCTATATCAATTACTCTATTTATGATTCTTCAACTATAAGCAGATTGGTGCTGGATGTGTCAGGGCAGATTAAGCAAATGGCATGGCTTGAAGCCTCTCATCAATGGCATATGTTTTGGTTTCAACCAAAAACGCAATGTTTTGAACCTGCCTCCCCTAATAACTGGAACTCGGGTGACAAATCTGGAGGGTGTGTGAGGAAAGCAGATTTGCAGTGTGGCAATAGTACTCATGCTAATGGGGAGAGAGACCAGTTTCATCGGGTGTCTAATGTGAGACTGCCAGAGTATCCACTAACACTCCCAACGAGTGGTGCCATGCAGTGCGAGTCAGATTGCCTAAATAACTGCTCTTGCTCTGCTTATTCTTACAACGTGAAGGAGTGTACAGTATGGGGTGGAGATCTTCTAAACTTGCAACAGCTATCAGATGACGACAGTAATGGTCGAGATTTCTATCTCAAACTTGCGGCCTCTGAGCTAAATGGGAAAGGCAATAAAATTTCTAGCAGCAAGTGGAAGGTGTGGCTAATTGTTACACTGGCCATTTCCCTAACTTCGGCCTTTGTCATTTGGGGGATATGGAGAAAGATCCGAAGAAAAGTAACAGCTCAGAAGATACCAACTATGAACTTAGTGAGGCAAATAAACTTTGGAGAGGGAAAGTCACAAAAAGGATATGAGGTAGCTGTGAAAAGGCTTTCAAAAAGATCTGGACAGGGATGGGAGGAGTTAAAGAATGAAGCCATGCTTATAGCCAAGCTGCAACATAAGAATCTTGTGAAGCTGTTCGGCTGCTGCATTGAGCAAGATGAGAAGATATTGATTTATGAGTATATGCCCAACAAAAGCTTGGATTTCTTCCTATTTGATTCTGCAAATCATGGGATTTTGAATTGGGAGACACGGGTTCACATCATTGAAGGGGTTGCTCAGGGTCTTCTTTATCTACATCAGTACTCTAGATTGAGGATTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTAGATAAGGACCTGAATCCTAAAATATCAGACTTTGGAATGGCAAGAATATTTGGGAGCAACGAATCAAAAGCAACAAATCATATAGTTGGGACTTATGGCTACATGTCCCCTGAGTATGCTTTGGAAGGCCTCTTTTCGACTAAATCTGATGTCTTTAGCTTCGGGGTTTTATTACTAGAGATTTTGAGTGGCAAGAAGAATACTGGATTTTACCAAAGCGACTCCCTCAATCTTCTCGGATATGCATGGGATCTGTGGAAAGACAGCAGGGGGCAGGAATTGATGGATCCAGTGTTGGAAGAGGCATTGCCAAGACACATTCTGTTGAAGTACATCAATATAGGCCTTCTTTGTGTTCAAGAAAGTGCAGATGACAGGCCTACGATGTCTGATGTTGTCTCAATGCTTGGCAATGAAAGTTTACATTTACCTTCTCCAAAACAACCGGCATTTTCAAATCTGAGAATTTATGATGGAAAGCTCAAGTTCAAGCTCAAGTAA 2253 0.4221 MGSMKFSTRRCSANYLVFLLISSGFHWQFADAFTDTILQGQSITTSQTIISAAGNFELGFFSPGNSTNYYVGIWYKKVSNQTIVWVANREYAFKNRSVVLTVRTDGNLEVWEGKISYRVTSISSNSKTSATLLDSGNLVLRNDNSSILWQSFDYPSDTFLPGMKLGYDKRAGKTWSLVSWKSSEDPSPGVFSLKYDPKGTGQIFILQGSTMYWASGTWDRDGQVFSLIREMRLNYMFNFSYSFSKEESYINYSIYDSSTISRLVLDVSGQIKQMAWLEASHQWHMFWFQPKTQCFEPASPNNWNSGDKSGGCVRKADLQCGNSTHANGERDQFHRVSNVRLPEYPLTLPTSGAMQCESDCLNNCSCSAYSYNVKECTVWGGDLLNLQQLSDDDSNGRDFYLKLAASELNGKGNKISSSKWKVWLIVTLAISLTSAFVIWGIWRKIRRKVTAQKIPTMNLVRQINFGEGKSQKGYEVAVKRLSKRSGQGWEELKNEAMLIAKLQHKNLVKLFGCCIEQDEKILIYEYMPNKSLDFFLFDSANHGILNWETRVHIIEGVAQGLLYLHQYSRLRIIHRDLKASNILLDKDLNPKISDFGMARIFGSNESKATNHIVGTYGYMSPEYALEGLFSTKSDVFSFGVLLLEILSGKKNTGFYQSDSLNLLGYAWDLWKDSRGQELMDPVLEEALPRHILLKYINIGLLCVQESADDRPTMSDVVSMLGNESLHLPSPKQPAFSNLRIYDGKLKFKLK* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0393 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672|GO:0006468
Vvi19g0393 750 Pfam PAN-like domain 328 385 IPR003609 -
Vvi19g0393 750 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 29 152 - -
Vvi19g0393 750 Gene3D Phosphorylase Kinase; domain 1 455 526 - -
Vvi19g0393 750 Gene3D Transferase(Phosphotransferase) domain 1 527 728 - -
Vvi19g0393 750 Gene3D - 28 152 IPR036426 -
Vvi19g0393 750 FunFam Uncharacterized protein 619 729 - -
Vvi19g0393 750 Pfam Protein tyrosine and serine/threonine kinase 468 720 IPR001245 GO:0004672|GO:0006468
Vvi19g0393 750 PIRSF SRK 6 296 IPR024171 GO:0004674
Vvi19g0393 750 PIRSF SRK 294 465 IPR024171 GO:0004674
Vvi19g0393 750 PIRSF SRK 464 746 IPR024171 GO:0004674
Vvi19g0393 750 ProSiteProfiles PAN/Apple domain profile. 320 404 IPR003609 -
Vvi19g0393 750 Pfam S-locus glycoprotein domain 213 294 IPR000858 GO:0048544
Vvi19g0393 750 Pfam D-mannose binding lectin 82 181 IPR001480 -
Vvi19g0393 750 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 23 711 - -
Vvi19g0393 750 CDD PAN_AP_plant 317 404 - -
Vvi19g0393 750 FunFam Os04g0616200 protein 466 527 - -
Vvi19g0393 750 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 527 617 - -
Vvi19g0393 750 SUPERFAMILY Protein kinase-like (PK-like) 471 731 IPR011009 -
Vvi19g0393 750 SMART serkin_6 454 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0393 750 SMART blect_4 34 155 IPR001480 -
Vvi19g0393 750 CDD B_lectin 41 155 IPR001480 -
Vvi19g0393 750 ProSiteProfiles Bulb-type lectin domain profile. 34 153 IPR001480 -
Vvi19g0393 750 SUPERFAMILY Hairpin loop containing domain-like 330 387 - -
Vvi19g0393 750 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 186 IPR036426 -
Vvi19g0393 750 ProSiteProfiles Protein kinase domain profile. 454 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0393 750 SMART ntp_6 328 403 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0393 Vvi-Chr19 4321690 4326268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0393 448 735 Receptor kinase-like Gene Family AT4G11530 56.803 4.58e-106 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0393 PK_Tyr_Ser-Thr 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0393 - - vvi:100256692 1267.29