Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0391 ATGGCAACCTCGAGATTTTGGAGGGGAAGTTTTCGTACAAGGTATTGGACTACTGGGGTGTGGGATGGGCAGATTTTCAGCCAGATTCCTGAGTTGCGTTTCTACTACTTTTATAAGTACAATACATCCTTTAATGAGAATGAAAGCTATTTCACTTACTCTTTTCATGATCCCTCCATTCTGAGCAGAGTGGTGGTAGATGTGTCAGGCCAGGTTAGGAAACTGAAATGGCATGAAGGCACACATGAATGGCATTTATTTTGGCTTCAACCAAAAATACAGTGTGAGATTTATGCTTACTGTGGGCCTTTTGGAACCTGCACTCGGGATTCTGTTGAATTTTGTGAATGCTTACCAGGTTTTGAACCTCGCTTCCCTGAAGACTGGAATCTGCAAGACAGATCTGGAGGGTGTGTGAGGAAAGAAGATTTGCAGTGTGTCAATGAAAGCCATGCTAATGGGGAGCGAGACCAGTTTCTTTTGGTGTCTAACGTGAGACTGCCCAAGTATCCAGTAACACTGCAAGCAAGGACTGCTATGGAGTGCGAATCAATTTGCCTGAATCGCTGCTCTTGCTCTGCTTATGCTTACGAGGGAGAGTGTAGAATATGGGGTGGAGATCTTGTAAACGTGGAGCAGCTACCAGATGGTGACAGTAATGCTAGAAGTTTCTACATCAAACTTGCTGCCTCTGAGCTAAATAAGAGAGGGGAAGATTTGTTAGTATTTGATTTCGGTAACAGCTCAGAAGATACCAACTGCTATGAGCTTGGCGAGACAAATAGACTTTGGAGGGACGAGAAGAAGGAAGTTGATTTGCCCATGTTCAGTTTTGCGAGTGTATCTGCTTCTACAAATAACTTCTGTATTGAAAATAAACTAGGAGAGGGCGGTTTTGGATCTGTTTACAAGGGAAAGTCACAAAGAGGATATGAGGTAGCTGTGAAAAGGCTCTCAAAAAGATCTAAACAGGGATGGGAGGAGTTAAAAAATGAAGCCATGCTTATAGCCAAGTTGCAACACAAGAATCTTGTGAAAGTTTTGGGATACTGCATCGAGCGGGATGAGAAGATATTGATTTATGAGTATATGTCCAACAAAAGCTTGGATTTCTTCCTCTTTGGTTTTGGCTACATGTCCCCCGAGTATGTTTTGCGAGGTCTCTTTTCAACTAAATCTGATGTTTTTAGCTTCGGGGTCTTGTTATTAGAGATTCTAAGTGGCAAGAAGATTACTGAATTTTATCATAGTGACTCGCTCAATCTTCTTGGATATGCATGGGATCTGTGGAAAAGCAACAGAGGACAAGAGTTGATTGATCCAGTATTGAATGAGATATCTTTGAGACATATTCTGTTAAGGTACATCAATGTAGCCCTTCTTTGTGTTCAAGAAAGTGCAGATGATAGGCCCACCATGTCCGATGTTGTCTCCATGCTTGTCAAGGAAAATGTACTTTTATCTTCTCCAAATGAGCCGGCCTTCTTAAATCTATCGAGTATGAAACCACATGCATCTCAAGATAGGCTTGAAATTTGTTCCTTAAATGATTTGACTCGGTTGAACCGTTCGTGTTAA 1578 0.4176 MATSRFWRGSFRTRYWTTGVWDGQIFSQIPELRFYYFYKYNTSFNENESYFTYSFHDPSILSRVVVDVSGQVRKLKWHEGTHEWHLFWLQPKIQCEIYAYCGPFGTCTRDSVEFCECLPGFEPRFPEDWNLQDRSGGCVRKEDLQCVNESHANGERDQFLLVSNVRLPKYPVTLQARTAMECESICLNRCSCSAYAYEGECRIWGGDLVNVEQLPDGDSNARSFYIKLAASELNKRGEDLLVFDFGNSSEDTNCYELGETNRLWRDEKKEVDLPMFSFASVSASTNNFCIENKLGEGGFGSVYKGKSQRGYEVAVKRLSKRSKQGWEELKNEAMLIAKLQHKNLVKVLGYCIERDEKILIYEYMSNKSLDFFLFGFGYMSPEYVLRGLFSTKSDVFSFGVLLLEILSGKKITEFYHSDSLNLLGYAWDLWKSNRGQELIDPVLNEISLRHILLRYINVALLCVQESADDRPTMSDVVSMLVKENVLLSSPNEPAFLNLSSMKPHASQDRLEICSLNDLTRLNRSC* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0391 525 Pfam Protein tyrosine and serine/threonine kinase 377 480 IPR001245 GO:0004672|GO:0006468
Vvi19g0391 525 Pfam Protein tyrosine and serine/threonine kinase 290 373 IPR001245 GO:0004672|GO:0006468
Vvi19g0391 525 CDD PAN_AP_plant 143 229 - -
Vvi19g0391 525 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Vvi19g0391 525 ProSiteProfiles Protein kinase domain profile. 288 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0391 525 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 471 - -
Vvi19g0391 525 Pfam S-locus glycoprotein domain 16 124 IPR000858 GO:0048544
Vvi19g0391 525 Gene3D Transferase(Phosphotransferase) domain 1 359 509 - -
Vvi19g0391 525 SMART ntp_6 154 228 IPR003609 -
Vvi19g0391 525 Gene3D Phosphorylase Kinase; domain 1 263 358 - -
Vvi19g0391 525 FunFam Uncharacterized protein 360 488 - -
Vvi19g0391 525 Pfam PAN-like domain 154 211 IPR003609 -
Vvi19g0391 525 ProSiteProfiles PAN/Apple domain profile. 146 229 IPR003609 -
Vvi19g0391 525 SUPERFAMILY Protein kinase-like (PK-like) 272 499 IPR011009 -
Vvi19g0391 525 FunFam Uncharacterized protein 263 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0391 Vvi-Chr19 4309670 4313880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0391 281 495 Receptor kinase-like Gene Family AT4G23230 37.755 1.73e-47 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0391 S_locus_glycop 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0391 - - vvi:100245158 746.888