Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0390 ATGACATGGATTGAAGACACTCATCAATGGAAATTGTTTTGGTCTCAACCCAGAAGACAATGTCAGGTTTATGCTTACTGTGGGCCTTCTAGAATCTGCAATCTGGATTCCTATGAACTGCCCGAGTATCCACTAACATTGCAAGCAAGAGTGCCATGGATTGCGAAATTTAATCTGTTGGTTCTTTACCAAGCATGGGAAGATTTGTTACTATTTGATTTCAGTGACAGCTCAGAAGATACCAACCATGAACTTAGTGAGGCAAATAAAGGTTGGAGAGGAGAGAAGAAGGAAGTTGATTTGCCAATGTTTAGTTGTGCGAGTGTATCTATTGCTACCAATAACTTCTCTATTGAAAATAAACTAGGAGAGGGAGGTTTTGGACCAGTTTATAAGGTGAATACAATCTTACAAGGTCAGTCAATTACAACCTCTCAGACCATCATATCTGCTGCTGGTAACTTTGAATTAGGATTCTTCAAGCCTGGAAACTCCACAAATTATTATGTGGGGATATGGTACAAGAAAATCTCAGACCAAGTCTCAGACAAAACCATTGCCTGGGTGGCTAACCGAGAGTATGCGTTCAAAAATCCGTCTGTGGTCCTTACTGTCAGCACAGATGGTAACCTCGAGATTTTGGAAGGGAAGTTTGCCTACAAGGTGCAAGCATATCATCAAATAGAAACACAAGTGCCACCCTGTTGGATTCTGGAAATGTTCTGGACTAGTGGCATATGGGATGGGCGTACTTTCAGCCTGGCTCCTGAGATGCTCGAAGACTACATATTTAATTACAGTTATTACTCTAGTAAGGATGAGAGCTATTGGAGTTACTCTCTCTATGATTCTTCCATTATAAGCAGATTGGTGCTGGATGTGTCAGGGCAGATTAAGCAAAGGAAATGGCTTGATTCCTCTCATCAATGGAATTTGTTTTGGGCTCGACCAAGAACAAAATGTGAGGTTTATGCTTCCTGTGGGCCTTTTGGAATCTGCCATGAGAGTGCAGTCGATGGATTCTGTGAATGTTTGCCAGGTTTTGAACCTGTCTCCCCTAATAACTGGTACTCGGACGAAGGGTGTGAGGAAAGCAGATTGCAGTGTGGCAATACTACTCATGCTAATGGGGAGAGAGACCAGTTTCGCAAGGTGTCTAGTGTGACACTACCGAATTATCCACTAACACTCCCAGCGAGGAGTGCCCAGGAGTGCAAGTCAGCTTGCCTAAATAACTGCTCTTGCTCTGCTTATGCCTACGACAGAGAGACGTGTACAGTATGGAGTGGAGATCTTCTAAATTTGCGACAGCCATCCCATTACAACAGTAGTGGTCAAGATTTCTATCTCAAACTTGCGGCCTCTGAGCTAAATGGGAAAGGTAATAAAAGTAGGGAATGCAGCAAGTGGAAGGTGTGGCTAATTGTTATACTGGCCATTTCCCTAACTTCAGCCTTTGTCATTTGGGGGATATGGAGAAAGCTCCGAAGAAAAGATCCTGCAAAACATGGGATTCTGAATTGGAAGACATGGGTTCACATCATTGAAGGGGTTGCTCAGGGTCTTCTTTATCTGCATCAATACTCCAGATTGAGGATTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTAGATAAGGACATGAATCCTAAGATATCAGATTTTGGAATGGTAAGAATATTTGGGAGCAACGAATCAAAAGCAACAAATCATATAGTTGGGACTTATGGCTACATGTCCCCTGAGTATGCATTGGAAGGCCTTTTTTCGACTAAATCTGATGTCTTTAGCTTCGGGGTCTTATTACTAGAGATTTTGAGTGGCAAGAAGAATACTGAATTTTACCAAAGTGACTCCCTCAATCTTCTCGGATATGCATGGGATCTGTGGAAAGACAACAGGGGACAGGAGTTGATGGATCCAGTGTTGGAAGAGACATTGCCAACACACATTCTGTTGAAGTACATCAATATAGGCCTTCTTTGTGTTCAAGAAAGTGCAGATGACAGGCTTACCATGTCTGATGTTGTCTCAATGCTTGGCAATGAAAGTGTACGTTTACCCTCTCCAAAACAACCGGCATTTTCAAATCTGAGAAGTGGGTTTTTGGTATGGGGAATGGGGTATGAGGACAAGATGCTGTAA 2148 0.425 MTWIEDTHQWKLFWSQPRRQCQVYAYCGPSRICNLDSYELPEYPLTLQARVPWIAKFNLLVLYQAWEDLLLFDFSDSSEDTNHELSEANKGWRGEKKEVDLPMFSCASVSIATNNFSIENKLGEGGFGPVYKVNTILQGQSITTSQTIISAAGNFELGFFKPGNSTNYYVGIWYKKISDQVSDKTIAWVANREYAFKNPSVVLTVSTDGNLEILEGKFAYKVQAYHQIETQVPPCWILEMFWTSGIWDGRTFSLAPEMLEDYIFNYSYYSSKDESYWSYSLYDSSIISRLVLDVSGQIKQRKWLDSSHQWNLFWARPRTKCEVYASCGPFGICHESAVDGFCECLPGFEPVSPNNWYSDEGCEESRLQCGNTTHANGERDQFRKVSSVTLPNYPLTLPARSAQECKSACLNNCSCSAYAYDRETCTVWSGDLLNLRQPSHYNSSGQDFYLKLAASELNGKGNKSRECSKWKVWLIVILAISLTSAFVIWGIWRKLRRKDPAKHGILNWKTWVHIIEGVAQGLLYLHQYSRLRIIHRDLKASNILLDKDMNPKISDFGMVRIFGSNESKATNHIVGTYGYMSPEYALEGLFSTKSDVFSFGVLLLEILSGKKNTEFYQSDSLNLLGYAWDLWKDNRGQELMDPVLEETLPTHILLKYINIGLLCVQESADDRLTMSDVVSMLGNESVRLPSPKQPAFSNLRSGFLVWGMGYEDKML* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0390 715 Gene3D Transferase(Phosphotransferase) domain 1 493 689 - -
Vvi19g0390 715 PIRSF SRK 219 504 IPR024171 GO:0004674
Vvi19g0390 715 PIRSF SRK 132 233 IPR024171 GO:0004674
Vvi19g0390 715 PIRSF SRK 45 135 IPR024171 GO:0004674
Vvi19g0390 715 PIRSF SRK 498 704 IPR024171 GO:0004674
Vvi19g0390 715 PIRSF SRK 1 42 IPR024171 GO:0004674
Vvi19g0390 715 Pfam PAN-like domain 377 434 IPR003609 -
Vvi19g0390 715 FunFam Uncharacterized protein 131 316 - -
Vvi19g0390 715 SMART serkin_6 420 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0390 715 SUPERFAMILY Hairpin loop containing domain-like 379 436 - -
Vvi19g0390 715 SUPERFAMILY alpha-D-mannose-specific plant lectins 165 216 IPR036426 -
Vvi19g0390 715 ProSiteProfiles Bulb-type lectin domain profile. 133 281 IPR001480 -
Vvi19g0390 715 SUPERFAMILY Protein kinase-like (PK-like) 501 698 IPR011009 -
Vvi19g0390 715 SUPERFAMILY Protein kinase-like (PK-like) 102 141 IPR011009 -
Vvi19g0390 715 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 494 689 - -
Vvi19g0390 715 SMART blect_4 133 242 IPR001480 -
Vvi19g0390 715 Gene3D - 131 316 IPR036426 -
Vvi19g0390 715 SMART ntp_6 377 452 IPR003609 -
Vvi19g0390 715 ProSiteProfiles PAN/Apple domain profile. 369 453 IPR003609 -
Vvi19g0390 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Vvi19g0390 715 CDD PAN_AP_plant 367 453 - -
Vvi19g0390 715 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 81 143 - -
Vvi19g0390 715 Pfam S-locus glycoprotein domain 2 36 IPR000858 GO:0048544
Vvi19g0390 715 Pfam S-locus glycoprotein domain 242 351 IPR000858 GO:0048544
Vvi19g0390 715 Pfam Protein kinase domain 502 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0390 715 ProSiteProfiles Protein kinase domain profile. 116 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0390 Vvi-Chr19 4296793 4304803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0390 499 696 Receptor kinase-like Gene Family AT4G23250 56.716 1.15e-68 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0390 Pkinase 2.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0390 - - cit:102621167 415.231