Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0389 ATGCAATTACAACACCACTGGGCAAAGATGGGCATTGGGCATTGTAAGGATACAATCTTACAAGGTCAATCACTCACAACCTCTCAGACCATCGTATCCGCTGGTGGTAACTTTGAATTAGGTTTCTTTTCTCCTGGAAAGTCCACAAAATACTATGTGGGGATATGGTACAAGAAAATCTCAGAGCAAACCATTGTGTGGGTAGCTAACCGAGACTATTCATTCACAAATCCATCCGTGGTTCTTACTGTCAGCACAGATGGCAACCTCGAGATTTTGGAGGGGAAGATTTCGTACAAGGTGACAAGCATATCATCAAACAGCAACACTAGTGCCACCCTGTTGGATTCTGGAAATCTTGTTTTGAGAAATAAGAAGTCAGATGTCTTATGGGAGAGCTTTGACTATCCATCGGACACGCTCCTGCCCGGAATGAAACTTGGATATGACAAAAGGGCTGGAAAAAGATGGTCATTGGTATCATGGAAGAGTAGAGAAGATCCCAGTCCAGGAGCTTTCTCCATAGAACATGACGCGAATGAAAGTAGCCAGATTTTTAACCTGCAAGGACCCAAAATGTATTGGACTACTGGGGTGTGGGATGGACAGATTTTCAGCCAGGTTCCAGAGATGCGTTTCTTCTACATGTATAAGCAAAATGTATCCTTTAATGAGAATGAAAGCTATTTTTCTTACTCTCTTCATAATCCCTCCATTCTGAGCAGAGTGGTGCTAGATGTGTCAGGCCAGGTTAAGCGTCTGAATTGTCATGAAGGCGCACATGAATGGGATTTATTTTGGCTTCAACCAAAAACACAGTGTGAGGTTTATGCTTACTGTGGGCCTTTCGGAACCTGCACTGGGGATTCTGTTGAATTTTGTGAATGCTTGCCAGGTTTTGAACCTCTCTTCCCTGAAGACTGGAATCTGCAAGACAGATCTGGAGGGTGTGTGAGGAAAGCAGATTTGCAGTGTGTCAATGAAAGCCATGCTAATGGGGAGCGAGACCAGTTTCTTTTGGTGTCTAACGTGAGACTGCCCAAGTATCCAGTAACACTGCAAGCAAGGAGTGCTATGGAGTGCGAATCAATTTGCCTGAATCGCTGCTCTTGCTCTGCTTATGCTTATGAGGGAGAGTGTAGAATATGGGGTGGAGATCTTGTAAACGTGGAGCAGCTACCAGATGGTGAAAGTAATGCTAGAAGTTTCTATATCAAACTTGCTGCCTCTGAGCTAAATAAGAGAGTTTCAAGCAGCAAGTGGAAGGTATGGCTAATTATTACACTGGCCATATCTTTAACTTCAGCCTTTGTCATTTATGGGATATGGGGAAGGTTCCGAAGAAAAGGGGAAGATTTGTTAGTATTTGATTTCGGTAACAGCTCAGAAGATACCAGCTATGAACTTGGCGAGACAAATAGACTTTGGAGGGGCGAGAAGAAGGAAGTTGATTTGCCCATGTTCAGTTTTGCGAGTGTATCTGCTTCTACAAATAACTTCTCTATTGAAAATAAACTAGGAGAGGGCGGTTTTGGATCTGTTTACAAGGGAAAGTTACAAAGAGGATATGAGGTAGCTGTGAAAAGGCTCTCAAAAAGATCTAAACAGGGATGGGAGGAGTTAAAAAATGAAGCCATGCTTATAGCCAAGCTGCAACACAAGAATCTTGTGAAAGTTTTGGGATACTGCATCGAGCGGGATGAGAAGATATTGATTTATGAGTATATGTCCAACAAAAGCTTGGATTTCTTCCTCTTTGATCCTGCAAAACGTGGGATTCTGAATTGGGAGATGCGAGTTCGCATCATTGAAGGGGTTGCTCAGGGACTTCTTTATCTCCATCAGTACTCCAGATTGAGAGTTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTGGATAAAGACATGAACCCAAAAATATCAGATTTTGGAATGGCAAGAATTTTTGGAGGAAATGAATCAAAAGCAACAAAACATATAGTTGGGACTTATGGCTACATGTCCCCCGAGTATGTTTTGCGAGGTCTCTTTTCAACTAAATCTGATGTTTTTAGCTTCGGGGTCTTGTTACTAGAGATTCTAAGTGGCAAGAAGATTACTGAATTTTATCATAGTGGCTCGCTCAATCTTCTTGGATATGCATGGGATCTGTGGAAAAACAACAAAGGACAGGAGTTGATTGATCCAGTATTGAATGAGATATCTTTGAGACATATTATGTTAAGGTACATCAATGTAGCCCTTCTTTGTGTTCAAGAAAGTGCAGATGATAGGCCCACCATGTTCGATGTTGTCTCCATGCTTGTCAAGGAAAATGTACTTTTATCTTCTCCAAATGAGCCAGCCTTCTCAAATCTATCGAGTATGAAACCACATGCATCTCAAGATAGGCTTGAAATTTGTTCCTTAAATGATGTAACACTTTCAAGCATGGGAGCACGATAA 2448 0.4183 MQLQHHWAKMGIGHCKDTILQGQSLTTSQTIVSAGGNFELGFFSPGKSTKYYVGIWYKKISEQTIVWVANRDYSFTNPSVVLTVSTDGNLEILEGKISYKVTSISSNSNTSATLLDSGNLVLRNKKSDVLWESFDYPSDTLLPGMKLGYDKRAGKRWSLVSWKSREDPSPGAFSIEHDANESSQIFNLQGPKMYWTTGVWDGQIFSQVPEMRFFYMYKQNVSFNENESYFSYSLHNPSILSRVVLDVSGQVKRLNCHEGAHEWDLFWLQPKTQCEVYAYCGPFGTCTGDSVEFCECLPGFEPLFPEDWNLQDRSGGCVRKADLQCVNESHANGERDQFLLVSNVRLPKYPVTLQARSAMECESICLNRCSCSAYAYEGECRIWGGDLVNVEQLPDGESNARSFYIKLAASELNKRVSSSKWKVWLIITLAISLTSAFVIYGIWGRFRRKGEDLLVFDFGNSSEDTSYELGETNRLWRGEKKEVDLPMFSFASVSASTNNFSIENKLGEGGFGSVYKGKLQRGYEVAVKRLSKRSKQGWEELKNEAMLIAKLQHKNLVKVLGYCIERDEKILIYEYMSNKSLDFFLFDPAKRGILNWEMRVRIIEGVAQGLLYLHQYSRLRVIHRDLKASNILLDKDMNPKISDFGMARIFGGNESKATKHIVGTYGYMSPEYVLRGLFSTKSDVFSFGVLLLEILSGKKITEFYHSGSLNLLGYAWDLWKNNKGQELIDPVLNEISLRHIMLRYINVALLCVQESADDRPTMFDVVSMLVKENVLLSSPNEPAFSNLSSMKPHASQDRLEICSLNDVTLSSMGAR* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0389 815 Pfam S-locus glycoprotein domain 195 302 IPR000858 GO:0048544
Vvi19g0389 815 ProSiteProfiles PAN/Apple domain profile. 325 408 IPR003609 -
Vvi19g0389 815 CDD STKc_IRAK 506 771 - -
Vvi19g0389 815 SMART serkin_6 500 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0389 815 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Vvi19g0389 815 Gene3D Phosphorylase Kinase; domain 1 476 575 - -
Vvi19g0389 815 PIRSF SRK 7 815 IPR024171 GO:0004674
Vvi19g0389 815 ProSiteProfiles Bulb-type lectin domain profile. 16 135 IPR001480 -
Vvi19g0389 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Vvi19g0389 815 FunFam Uncharacterized protein 475 575 - -
Vvi19g0389 815 SMART ntp_6 333 407 IPR003609 -
Vvi19g0389 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 576 777 - -
Vvi19g0389 815 Gene3D - 12 134 IPR036426 -
Vvi19g0389 815 ProSiteProfiles Protein kinase domain profile. 500 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0389 815 SMART blect_4 22 137 IPR001480 -
Vvi19g0389 815 Gene3D Transferase(Phosphotransferase) domain 1 576 780 - -
Vvi19g0389 815 SUPERFAMILY Protein kinase-like (PK-like) 484 787 IPR011009 -
Vvi19g0389 815 Pfam D-mannose binding lectin 64 163 IPR001480 -
Vvi19g0389 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 12 134 - -
Vvi19g0389 815 CDD B_lectin 23 137 IPR001480 -
Vvi19g0389 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 168 IPR036426 -
Vvi19g0389 815 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 760 - -
Vvi19g0389 815 CDD PAN_AP_plant 322 408 - -
Vvi19g0389 815 Pfam PAN-like domain 333 390 IPR003609 -
Vvi19g0389 815 Pfam Protein kinase domain 501 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0389 Vvi-Chr19 4276288 4280440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0389 488 784 Receptor kinase-like Gene Family AT4G11530 60.133 3.69e-118 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0389 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0389 - - vvi:100246936 1618.59