Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0385 ATGAAGCTTGGGTATGACAGGGGGAATGGAAAAAAATGGTCATTGGTCTCATGGAGGAGCGTGGAAGATCCCAGTCCTGGGGGTTTCTCCATGGAACTCGACCCTGGAGGAACACTCCAGATTATTATCATGCAAGGGTCTACAAGGTACTGGACTAGTGGGATGTGGGACGGAGAGATCTTCGCAATGATTCCTGAAATGAATTCAAACAGAGCATACAAGATCAGCAATTTCTTCAGTGAGAAAAATGAGAGCTATTTCAATTATTCTGTTATTAACAGCTCCATTGTAAGCAGACCAGTACTGGATGTGTCAGGGCAGATTAAGCTGGAGTCATGGCAGGAAGACAGTCATGAATGGAAGTTGATTTGGTATCAACCAAGCACGCACCGTAAGGTCTATGCTTTCTGTGGGGCTTTTGGAAGCTGTAATCCGGTTTCCCAAAACAATTGTGAATGTTTGCCAGGTTTTGAACCTCGCCATCCTGAAAGCTGGAAACTGCTAGACAGATCGGGAGGGTGTGTGAGGAAAGCAGAATTGCAGTGTGGCAATCACAGTGCTGCTAACGGAGATGAAGACTGGTTTCTTCGGGTGTCTAAAGTGAAACTTCCCATTGGCTACATGTCTCCTGAGTACGCATTGGAAGGCCTTTTTTCAACTAAATCTGACGTGTTTAGCTTCGGGGTGTTGCTATTAGAGATCATGAGTAGCAAGAAGAACACCGGTTTTTATCAAACCGACTCCCTTAATCTTCTTGGATGTGAATGGGATCTGTGGAGAAGCAGCAGAGCACAGGACTTGATGGATCCGGTACTGGGAAGTGTATCTTCGACAAACACCCTGTTGAGGTATATCAATGTAGGCCTTCTTTGTGTTCAAGAGAGTGCAGCTGACAGGCCCACTATGTCTGATGTTGTCTCAATGCTTGACAATGAAAGTGTAGTTTTACCTTCTCCAAAACAACCAGCCTTTTCAAATCTGAGAAGTGGGTTGGAGCTTCATTCATCTGGGAACAGGCCAGAAGTTTGTTCTGTAAATTGTGTGACACTTCCAATAATGGAAGCACGATCTTAG 1074 0.4497 MKLGYDRGNGKKWSLVSWRSVEDPSPGGFSMELDPGGTLQIIIMQGSTRYWTSGMWDGEIFAMIPEMNSNRAYKISNFFSEKNESYFNYSVINSSIVSRPVLDVSGQIKLESWQEDSHEWKLIWYQPSTHRKVYAFCGAFGSCNPVSQNNCECLPGFEPRHPESWKLLDRSGGCVRKAELQCGNHSAANGDEDWFLRVSKVKLPIGYMSPEYALEGLFSTKSDVFSFGVLLLEIMSSKKNTGFYQTDSLNLLGCEWDLWRSSRAQDLMDPVLGSVSSTNTLLRYINVGLLCVQESAADRPTMSDVVSMLDNESVVLPSPKQPAFSNLRSGLELHSSGNRPEVCSVNCVTLPIMEARS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0385 357 FunFam Uncharacterized protein 208 318 - -
Vvi19g0385 357 Pfam S-locus glycoprotein domain 51 160 IPR000858 GO:0048544
Vvi19g0385 357 Gene3D Transferase(Phosphotransferase) domain 1 174 316 - -
Vvi19g0385 357 SUPERFAMILY alpha-D-mannose-specific plant lectins 15 58 IPR036426 -
Vvi19g0385 357 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 206 300 - -
Vvi19g0385 357 Pfam Protein tyrosine and serine/threonine kinase 199 308 IPR001245 GO:0004672|GO:0006468
Vvi19g0385 357 Pfam Domain of unknown function (DUF3403) 311 356 IPR021820 GO:0004674
Vvi19g0385 357 SUPERFAMILY Protein kinase-like (PK-like) 198 336 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0385 Vvi-Chr19 4230991 4232990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0385 190 324 Receptor kinase-like Gene Family AT4G23250 46.715 4.54e-35 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0385 PK_Tyr_Ser-Thr 2.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0385 - - vvi:104877408 439.499