Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0384 ATGCCTAATAAAAGCTTGGATGCTTTTCTGTTTGATCCAAGTAAGCATGCCCAGCTTGATTGGCCAACTCAATTCGACATCATTGAGGGCATAGCACGCGGGCTTCTCTATCTTCACCATGATTCTCGTCTTCGAGTGATCCATCGAGATTTGAAGGAGCGCAACATTCTCCTGGACGAGGATATGAATCCAAGAATTTCAGATTTTGGGATGGCAAGAATATTTGGAGGGAAGCAAACTATAGCAAACACTAACAGGGTTGTTGGAACATATGGCTATATGTCCCCTGAGTATGCAATGGAAGGGATATTTTCAGAGAAGTCTGATGTATTCAGTTTTGGAGTCCTGCTATTAGAGATTGTGAGCAGTAGGAGGAACACTAGCTTTTATCAAAATGAACACTCCCTTAGCCTCATAACATATGCCTGGAATCTGTGGAAAGAAGGAAAGGGATTGGAGTTGATGGATTCAACACTATCGGAGTCATGTTCTCCGGAAGAAGTAATGAGATGCATTCATGTGGGCCTCTTATGTGTGCAGGAGCATGTGAATGACAGGCCATCCATGTCTAATGCGGTGTTTATGCTTGGAGGCGAAACCGCTAGACCTGTTCCAAAACAACCTGCATTCACCTTGGAAGGAAGCCCCAGGCAGTCTATTTATTTTCTACAAGTACTGGCACAACAGCAACAGCAAGCGGAAGATGCTCTGGTGCTTGATTAG 723 0.4426 MPNKSLDAFLFDPSKHAQLDWPTQFDIIEGIARGLLYLHHDSRLRVIHRDLKERNILLDEDMNPRISDFGMARIFGGKQTIANTNRVVGTYGYMSPEYAMEGIFSEKSDVFSFGVLLLEIVSSRRNTSFYQNEHSLSLITYAWNLWKEGKGLELMDSTLSESCSPEEVMRCIHVGLLCVQEHVNDRPSMSNAVFMLGGETARPVPKQPAFTLEGSPRQSIYFLQVLAQQQQQAEDALVLD* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0384 240 ProSiteProfiles Protein kinase domain profile. 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0384 240 Gene3D Transferase(Phosphotransferase) domain 1 1 204 - -
Vvi19g0384 240 SMART serkin_6 3 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0384 240 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 215 - -
Vvi19g0384 240 SUPERFAMILY Protein kinase-like (PK-like) 1 207 IPR011009 -
Vvi19g0384 240 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
Vvi19g0384 240 Pfam Protein tyrosine and serine/threonine kinase 2 192 IPR001245 GO:0004672|GO:0006468
Vvi19g0384 240 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0384 Vvi-Chr19 4226619 4228994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0384 3 216 Receptor kinase-like Gene Family AT4G23150 60.465 2.47e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0384 PK_Tyr_Ser-Thr 4.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0384 - - pda:103696826 313.538