Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0366 ATGGGAAGAACACCATGCTGTGACAAAAATGGGATGAAGAAAGGGCCATGGACTGTAGAGGAAGATCAGAAGCTCCTTGATTATATTCAGAAACACGGCCATGGGAGATGGCGGACACTTCCCAAAAATGCAGGTCTAAAGAGGTGTGGAAAGAGTTGTCGGCTTCGTTGGACAAACTACTTGAGGCCAGACATCAAGAGGGGGAGATTCTCATTTGAAGAAGAAGAGGCCATCATACAATTACATGGTATTTTGGGTAACAAGTGGTCTGCAATTGCTGCTAGGCTCCCTGGAAGAACCGATAATGAGATCAAGAACTATTGGAACACTCGCATCAGGAAGAAGCTTTTAAGAATGGGAATTGATCCCGTCACTCATGCTCCACGGATGGATCTTCTGGAACTGGCCTCGCTTCTTGGCTCATCCCTCTACAATTCATCATTACAACTTAATGTTCCAGCTGGGTCCCTTGGGATGGGGCCTATGGTGAACGACGATGTTCTGACTCTAGCTACTGCTCTCTTGTCATCACACTGTGAAAACCCAGAACTCCAGCTACAAAATCTTCTAGAAAATCAGCTCAGGAATCCCCAAGTCCAAAACCAGTTCGAGTCCTTCCAAGGGAACAATCTACAGAGCTCAATTCAAGAAGTTCAAGCTTGTCCAACATCCAGCGCTGCAAGCACTCCATTTCTGAATGAAACCCAGCTCATGCAGGCCATTGCGGAGCATCTCTCTCAAAACCCTACCGATTTTGCCTACCAAAATTCCTTGCCAAATCTATGGCAAGTTCATGGTGGGCATCCTATTACAGCTGCCAGTTTCACCAATCCTACACTCAGCTTTGATTCCATCCCCAGCTCCATAACCGGCCACCAGACACTTAAATCCAATGCCGTCAGTAACAACACGCAGAATTTCAGTTTCGATTCTGTTCTATCCACGCCGTCATCCACCTCAACTCCATTGGACTCATCACAGATGACCTATGCCAAGGGGAGCACTGAAGATGAGAGGGACAGCTACTGCAGCAACTTCTTGATGTTTGATATCCCAAGTGACTTGGATGTTAATGCAATTATGTAA 1086 0.4632 MGRTPCCDKNGMKKGPWTVEEDQKLLDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKRGRFSFEEEEAIIQLHGILGNKWSAIAARLPGRTDNEIKNYWNTRIRKKLLRMGIDPVTHAPRMDLLELASLLGSSLYNSSLQLNVPAGSLGMGPMVNDDVLTLATALLSSHCENPELQLQNLLENQLRNPQVQNQFESFQGNNLQSSIQEVQACPTSSAASTPFLNETQLMQAIAEHLSQNPTDFAYQNSLPNLWQVHGGHPITAASFTNPTLSFDSIPSSITGHQTLKSNAVSNNTQNFSFDSVLSTPSSTSTPLDSSQMTYAKGSTEDERDSYCSNFLMFDIPSDLDVNAIM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0366 361 Gene3D - 69 116 - -
Vvi19g0366 361 CDD SANT 16 61 IPR001005 -
Vvi19g0366 361 CDD SANT 69 110 IPR001005 -
Vvi19g0366 361 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi19g0366 361 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vvi19g0366 361 FunFam MYB-related transcription factor 13 66 - -
Vvi19g0366 361 Gene3D - 13 66 - -
Vvi19g0366 361 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi19g0366 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi19g0366 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 293 - -
Vvi19g0366 361 SMART sant 66 114 IPR001005 -
Vvi19g0366 361 SMART sant 13 63 IPR001005 -
Vvi19g0366 361 FunFam MYB transcription factor 68 129 - -
Vvi19g0366 361 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi19g0366 361 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi19g0366 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0366 Vvi-Chr19 3913873 3915228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0366 1 361 MYB Transcription Factor Family AT4G21440 50.938 2.43e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi19g0366 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0366 K09422 - vvi:100243528 691.804