Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0354 ATGAGCTATGTTTCAATCCTAACCTCTCAAAATCTGTGCATATATTCTCCTACAGAGACTAGAGCTAGGCTTGCTTGCTTGCTCCCTCTCTCTTTCTCTCTCTCTCTCTCTGCGGAAATGGCAAGTGAGCGAGAAATTTCATATTCTTCCCGAAGCTATGGTGTCTCGGATGAGGAAGAAGACGAGGAGGAAGAGGAAGAAGACGAGGAGGAGGAGTGCAGAGATCGTGAACCGTTGTATGGGAGGTGCAGTTCTGGTCTAAAACCAAAATGTCTGAGCCGGGTGTTGGACCCCAGAGCCAAATGGGTCCAGGAATGGAACAGGGTTTTTCTCCTGGTCTGCGCCACAGGCCTCTTCGTCGACCCACTCTTCTTCTACGTCCTCTCCATAAACAGTACCTGTATGTGTCTCTTCGTGGACGGGTGGTTCGCCATCACCGTGACCGCCCTCCGGTGTATGACGGACGCCTTGCACCTCTGGAACATGTGGCTGCAGCTCAAGATGGCGAAGCGGACGTTCCACGTGGTCGGCGAAGAAGGGAGCCGGCTGCACGACGCCAGCGCTAGCACGGTGGCCCTCCGGTACTTGAAGGCGAAAAAGGGCTTCTTCTTCGACCTGTTCGTCATCCTCCCTCTACCCCAGATTGTACTGTGGGTGGCAATTCCCTCCTTGTTGGAGAGAGGCTTAACAACAACAGTGATGACAGTGCTCTTGATCATATTTCTCTTCCAATACCTCCCCAAAATCTACCACTCAGTCTGCCTACTACTCCGAATGCAAAACGTTTCGGGCTACATATTCGGCACCATTTGGTGGGGAATCGTCCTCAACATGATTGCCTACTTTGTCGCCTCCCATGCAGCAGGAGCATGTTGGTACTTGTTAGGCCTGCAGAGAGCTGCAAAATGCCTGAAAGAGGAATGTGCAGTGGCAAATTATTGTAGCACAAAAACACTTGCTTGTAAAAATCCTATCTACTATGGAACAACTAGCCTGTTGAAAGATAGAGCAAGACTTGCATGGGCAAACAACAAGCACGCGCGGTCTACTTGCCTGGACAGTGCTGATAATTTTGAATATGGAGGTTATAGATGGACAATTCAGCTTGTTACCAACGATAATCGCTTGGAAAAGATTCTGTTTCCACTTTTCTGGGGCCTAATGACACTAAGTACTTTCGGAAACTTGGAGAGCACCACAGAATGGTTGGAAGTCATATTCAATATTATTGTTCTCACCAGTGGACTCATTCTGGTCACTATGTTGATTGGAAATATTAAGGTGTTCTTGCATGCGACCACATCAAAGAAACAAACAATGCAATTAAAAATGAGGAACATAGAGTGGTGGATGAGGAGGAGGAAATTGCCTTTGGGTTTCAGGCAGAGAGTGCGTAATTATGAGAGGCAAAAGTGGGCAGCGATGCGTGGCGTTGATGAATGCCAGATGACGAAGAACCTCCCCGAGGGCCTCAGGAGGGACATCAAGTACCATCTCTGTCTGGACTTGGTGAGACAGGTGCCATTGTTTCAACACATGGATGATCTAGTCCTGGAGAACATATGCGATCGTGTGAAGTCCCTCATATTCACTAAGGGGGAAGTAATAACAAGAGAGGGTGACCCAGTCCAGAGAATGCTGTTTGTAGTAAGGGGTCATCTCCAGAGCAGTCAAGTACTCCGAGATGGTGTGAAAAGTTGTTGCATGTTAGGCCCTGGAAACTTCAGTGGGGACGAGCTCTTGTCATGGTGCCTTAGAAGACCCTTCATTGAAAGGCTACCCCCATCTTCATCAACCCTAATCACCCTTGAAACCACTGAAGCATTTGGGCTAGAAGCTGACGACGTGAAGTATGTCACACAACATTTTAGATACACATTTGTGAAGGAAAGAGTCAAGAGAAGTGCGAGATACTACTCGCCTGGGTGGAGGACTTGGGCAGCTGTGGCCATTCAGTTGGCTTGGAGGAGGTACAAACACCGGTTGACACTCACTTCATTGTCATTTATCCGGCCAAGAAGACCCGTATCACGGTGCTCTTCGCTAGGGGAGGACAGACTCCGGCTTTATACAGCCATGTTAACTTCACCAAAGCCAAATCAAGATGATTTCGACTTCTGA 2121 0.4842 MSYVSILTSQNLCIYSPTETRARLACLLPLSFSLSLSAEMASEREISYSSRSYGVSDEEEDEEEEEEDEEEECRDREPLYGRCSSGLKPKCLSRVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYVLSINSTCMCLFVDGWFAITVTALRCMTDALHLWNMWLQLKMAKRTFHVVGEEGSRLHDASASTVALRYLKAKKGFFFDLFVILPLPQIVLWVAIPSLLERGLTTTVMTVLLIIFLFQYLPKIYHSVCLLLRMQNVSGYIFGTIWWGIVLNMIAYFVASHAAGACWYLLGLQRAAKCLKEECAVANYCSTKTLACKNPIYYGTTSLLKDRARLAWANNKHARSTCLDSADNFEYGGYRWTIQLVTNDNRLEKILFPLFWGLMTLSTFGNLESTTEWLEVIFNIIVLTSGLILVTMLIGNIKVFLHATTSKKQTMQLKMRNIEWWMRRRKLPLGFRQRVRNYERQKWAAMRGVDECQMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEADDVKYVTQHFRYTFVKERVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPVSRCSSLGEDRLRLYTAMLTSPKPNQDDFDF* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0354 706 MobiDBLite consensus disorder prediction 56 74 - -
Vvi19g0354 706 SMART cnmp_10 509 638 IPR000595 -
Vvi19g0354 706 ProSiteProfiles cAMP/cGMP binding motif profile. 509 619 IPR000595 -
Vvi19g0354 706 Gene3D Helix hairpin bin 434 500 - -
Vvi19g0354 706 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 70 671 - -
Vvi19g0354 706 MobiDBLite consensus disorder prediction 49 77 - -
Vvi19g0354 706 FunFam Cyclic nucleotide-gated ion channel 1 436 500 - -
Vvi19g0354 706 Coils Coil 56 76 - -
Vvi19g0354 706 SUPERFAMILY Voltage-gated potassium channels 98 430 - -
Vvi19g0354 706 CDD CAP_ED 509 615 IPR000595 -
Vvi19g0354 706 FunFam cyclic nucleotide-gated ion channel 4 507 625 - -
Vvi19g0354 706 Pfam Ion transport protein 106 426 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi19g0354 706 SUPERFAMILY cAMP-binding domain-like 435 623 IPR018490 -
Vvi19g0354 706 Pfam Cyclic nucleotide-binding domain 530 617 IPR000595 -
Vvi19g0354 706 Gene3D Jelly Rolls 507 625 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0354 Vvi-Chr19 3814626 3826657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0354 92 705 Ion Channels AT5G54250 78.317 0.0 1018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0354 K05391 - vvi:100265816 1380.16