Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0346 ATGGGGAAGGTGATCGGAATGAAACACGGTCACCGGAAGGCACCAAATCAATGTGATTCCCCTTCCTGGAGTACTACCCTTGCTGAGTCTGTGCACAATACGAGTAGCCCCTGTGAAGTTGAAGAGTCCAATAACAGTGACAAAGTGAATGGAAGCAAGTGCGAGGCAAATGCAGTTGCAAAAAGTGGTCAGTCCCCTTTTCATGATACTCCATTGCAAATGAAAGCTCCTCTGCCTAATGGGCAGCCTTGTGGGAGTGGTGCAGGACAAAAGGGTTTAGATGCTAAATACCAGCCTAGGATAAGTGATCACGAGCTACAACAGATCTCCAGAGACCTAAATTCTGTTGTCACTCCTTTGTTTGAGAAAACATTGACCATTTCTGATGCTGACTACAAGCTGGGCCGCCTGGTGATACCCAAGAAATGTGCACAGGAATATTTCCCTCTAATTTCTGGGCCTGAAGGAGTCACTATAAGAATCCTGGATACAAGAGGAAGAGAATGGGTATTTCACTACCGTTATTGGAGCAATGCTAACAGCCAGATGTACGTACTAGATGGGCTTAAAGACTTTGTAATTTCAATGCAGTGGCAAGCAGTAACATTTTATCGGATAGAACCGAAGGGACAGTTGGTTCTGGGGCTCAGAAAGGCTTCAGTGACTCCACCATCTCACAAGGTATGGCATACTAAACTAACCTTGTCTCCAAGTGTATGTGTAAAACAGATTAGTGTGCTACATGAATAA 750 0.448 MGKVIGMKHGHRKAPNQCDSPSWSTTLAESVHNTSSPCEVEESNNSDKVNGSKCEANAVAKSGQSPFHDTPLQMKAPLPNGQPCGSGAGQKGLDAKYQPRISDHELQQISRDLNSVVTPLFEKTLTISDADYKLGRLVIPKKCAQEYFPLISGPEGVTIRILDTRGREWVFHYRYWSNANSQMYVLDGLKDFVISMQWQAVTFYRIEPKGQLVLGLRKASVTPPSHKVWHTKLTLSPSVCVKQISVLHE* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0346 249 Gene3D - 99 222 IPR015300 -
Vvi19g0346 249 SUPERFAMILY DNA-binding pseudobarrel domain 118 218 IPR015300 -
Vvi19g0346 249 SMART B3_2 121 220 IPR003340 GO:0003677
Vvi19g0346 249 CDD B3_DNA 119 218 IPR003340 GO:0003677
Vvi19g0346 249 Pfam B3 DNA binding domain 121 217 IPR003340 GO:0003677
Vvi19g0346 249 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 21 226 - -
Vvi19g0346 249 MobiDBLite consensus disorder prediction 1 51 - -
Vvi19g0346 249 MobiDBLite consensus disorder prediction 17 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0346 Vvi-Chr19 3676945 3682036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0346 20 220 B3 DNA Binding Superfamily AT2G30470 42.233 2.20e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi19g0346 B3 4.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0346 - - vvi:100854644 440.654