Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0342 ATGAACGAGAAGGCCAACGTTACCAAGGAGCTCAATGCCAGGCACAGAAAGATACTAGAAGGCCTTCTTAAACTGCCTGAGAACAGAGAATGTGCTGACTGCAAAAGCAAAGGTCCTAGATGGGCTAGTGTGAATCTAGGCATATTTATATGCATGCAATGTTCTGGGATCCATAGAAGCCTTGGGGTACACATATCAAAGGTGAGGTCTGCCACACTGGACACATGGCTTCCTGAACAGGTTGCATTTATTCAGTCTATGGGAAATGAGAAGGCAAATAGTTATTGGGAAGCAGAGCTACCTCCAAACTATGATAGAGTTGGGATTGAGAATTTTATCCGTGCAAAGTATGAAGATAAGAGATGGATTCCTAAGGATGGAAAACCAAGATCAACTTCTCAGGGTCGAGAAGAAAAGGCATCCGCACATTGGCATAGGCCTGGGGATAGAGGTGGGAGTGGAAATACCAGCAATTCTGAGAATTCATTTGAGGAAAAGAAGAATGTTCAGGCACCTAGTATAAAAGATAACGGGCCTGCTACAAGGATTAGCCTTCCTGTGCCTCCTAAAGGACCTGAGCCAGTTGCCCCTATTCCAAAGCCTCATCAAGTTACTCAGAAACCAGAACCATCAGTGCCACAAGCTGAATCAGCTAAGCAGGCTGCAGATTCTACTCCAGTAGTTCCTCCCCCTAAAGTTGATTATGCTACTGATCTTTTTAACATGCTTTCTATGGATGATCCTACTGAAAATGGCTCAGAGGCAGCCTCTGCTGATGATAATGCATGGGCTGGTTTCCAGTCTGCTGAACAAACTTCAACAGCTGAGAAAACTGCTCCTGCAAAACCAATTGAAGGTAATACCCAGTCCACTTCTGGAATTGAGGATCTATTTAAAGATTCACCTTCAATCATGCCAGCTGCCTCAGATAAGCCCCAGAAAGATGTAAAGAATGATATAATGAGTCTTTTTGAGAAGTCCAATATGGTGTCACCATTTTCTCTTCATCAACAACAACTTGCCATGCTGGCGCAGCAACAGTCCCTTCTCATGGCTGCTGCAGCTAAATCCACAGGTGTGGCCCCAAAGTTTTCCATCAATGCACAACAACATAGCTCAAATGGTACCGATTTACCCACTCAGAACTGGCCAAACATGGGCTACCAAATTCCTGGAATGATGATGCAAGCTGCAGGGAACAACGATATGCAGAAATTTATGCAGGCTGCAAACATGGGGCCAACACATCCAGCTGGGAACTCAGTTCCATTTGCAACATCCAGTATGTATACTATGGGCCAAGTTGCTCCCACCAATGGTGTCGCAACCACTAGCGTGAGTAGACCGCCATCAGCATCACCAGCTACGCCTCCTACACAGCCAGGAAAAGAATATGATTTCTCGTCATTAACACAGGGCATGTTCTCGAAACCCTAA 1437 0.4523 MNEKANVTKELNARHRKILEGLLKLPENRECADCKSKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWIPKDGKPRSTSQGREEKASAHWHRPGDRGGSGNTSNSENSFEEKKNVQAPSIKDNGPATRISLPVPPKGPEPVAPIPKPHQVTQKPEPSVPQAESAKQAADSTPVVPPPKVDYATDLFNMLSMDDPTENGSEAASADDNAWAGFQSAEQTSTAEKTAPAKPIEGNTQSTSGIEDLFKDSPSIMPAASDKPQKDVKNDIMSLFEKSNMVSPFSLHQQQLAMLAQQQSLLMAAAAKSTGVAPKFSINAQQHSSNGTDLPTQNWPNMGYQIPGMMMQAAGNNDMQKFMQAANMGPTHPAGNSVPFATSSMYTMGQVAPTNGVATTSVSRPPSASPATPPTQPGKEYDFSSLTQGMFSKP* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0342 478 CDD ArfGap 19 117 - -
Vvi19g0342 478 MobiDBLite consensus disorder prediction 151 168 - -
Vvi19g0342 478 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Vvi19g0342 478 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vvi19g0342 478 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Vvi19g0342 478 MobiDBLite consensus disorder prediction 267 314 - -
Vvi19g0342 478 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vvi19g0342 478 MobiDBLite consensus disorder prediction 185 206 - -
Vvi19g0342 478 MobiDBLite consensus disorder prediction 267 297 - -
Vvi19g0342 478 Pfam Putative GTPase activating protein for Arf 17 124 IPR001164 GO:0005096
Vvi19g0342 478 MobiDBLite consensus disorder prediction 123 146 - -
Vvi19g0342 478 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vvi19g0342 478 MobiDBLite consensus disorder prediction 440 478 - -
Vvi19g0342 478 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vvi19g0342 478 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vvi19g0342 478 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vvi19g0342 478 MobiDBLite consensus disorder prediction 462 478 - -
Vvi19g0342 478 MobiDBLite consensus disorder prediction 123 233 - -
Vvi19g0342 478 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 477 IPR044520 GO:0005096
Vvi19g0342 478 MobiDBLite consensus disorder prediction 207 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0342 Vvi-Chr19 3640098 3649935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0342 16 143 C2H2 Transcription Factor Family AT4G05330 45.652 3.47e-29 115