Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0333 ATGATAAGGATCACTACTATCCCCACGAAGAAAGAGCCAGTCTTCTCCACCTACTTAGATAACCAGCCTGGTGAATTGATCCAAGTGCCTGAAGGAGAGAGAACGAGGACCAGAGACAGCAACTTGCTTGGTAAGTCTGAGCTCTCCGGCATTCCTCTAGCTCTCAGAGATGTTCCTCGGATCACAGTCTGCTTTGATATTGATGCCAATGAGATCCTGAACATACCCATTGAGGACACACCACCGACAGAGCAAACACAGCTGCACTACGGGTTTCACCCATGCATGGTTATCCCCTATCACCCCGCTTCTGCATGA 318 0.4937 MIRITTIPTKKEPVFSTYLDNQPGELIQVPEGERTRTRDSNLLGKSELSGIPLALRDVPRITVCFDIDANEILNIPIEDTPPTEQTQLHYGFHPCMVIPYHPASA* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0333 105 PANTHER HEAT SHOCK PROTEIN 70KDA 3 83 IPR013126 GO:0005524|GO:0140662
Vvi19g0333 105 Pfam Hsp70 protein 3 85 IPR013126 GO:0005524|GO:0140662
Vvi19g0333 105 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 5 84 IPR029047 -
Vvi19g0333 105 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 2 90 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0333 Vvi-Chr19 3573657 3573974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0333 3 88 Calmodulin-binding Proteins AT3G09440 69.767 9.33e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0333 K03283 - qsu:112017276 122.479