Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0330 ATGGGGGGTCCTTTGCTCACTGCTCAAAATGATACACTTGGAAGAACTTGGGAGAATGATGAGAAATACCTCCATGTGAACAGCTCTGCCAAGAATCTTTCGGTGAACCCTGGAAACATAAAATATACTACTGCTGTCACAACAGAAACAGCGCCGAATTTGGTTTATTCCACTGCCGAATCCATGGGTAATGCAAATCAATGGGAACTTCAATATAACTTGGGTTTTCTCTACTTCATGTATTTTGTTCGGGTGCATTTCTGTGACATTTTGAGCACGTCTCTGAACAATCTTGTCTTCAACTTGTTCATAAATTCTGATATTGCTCTGGAGAGTCTTGATCTCTCATCCTTAACTGGTGATTTGAGTGTACCGTATTACAAAGACTTCATCTCCAACTCTTCAGCAGATTCAGATGTTTTGACTGTTAGTGTGGGTCCAGATACAATGGCTGATGTTACTAATGCAATTATGAATGGCTTGGAGATCATGAGGATCAGCAATGGAGCTAAAAGCTTGGATGGGCTTTCTTCAGTTGAGAGTCTCCTTCCCCAACCACCCACAAAAAGGAACATGATAGGAATCATTATTGGTTGTGTTGTGGGAGCTTCTGTTGCTGTGGTGTTCATAATTCTCTGTATTTGCTGCTTTGTTGCCTGTAGGTCGAAGACCCCCACCCAGGGGCATCCATGGCTTCCCTTGCCCTTATATGGAAACTCCCAGACCATGACGAAGATGTCCACGACTTCTCAAAAGAGTGGAACAGCGAGCTGCATCTCATTAGCTTCCACCAATCTTGGCCGGCTCTTCATGTTCCAAGAAATCATGGATGCAACAAACAAATTCGATGAGAGCCTGCTTCTTGGAGTTGGTGGTTTTGGTAGGGTCTACAAAGGAACACTTGAAGATGGGACTAAAGTAGCTGTCAAAAGAGGAAACCCCAGATCTGAACAAGGTCTTGCTGAATTCCGAACTGAAATTGAAATGCTATCCAAGCTCCGTCACCGCCACCTTGTCTCTCTTATAGGCTATTGTGATGAACGATCAGAGATGATTCTGGTTTATGAGTACATGGCTAATGGTCCCCTAAGGAGCCATCTTTATGGAACAGATCTACCGTCTCTCTCCTGGAAGCAACGACTTGAAATTTGCATTGGAGCTGCAAGGGGGCTTCATTATCTTCACACAGGTGCAGCTCAGAGCATAATTCACCGTGATGTGAAGACAACAAACATTCTCTTGGATGAGAATTTTGTAGCAAAAGTTGCTGATTTTGGCCTCTCAAAGACTGGTCCTGCCCTGGATCAGACCCATGTAAGCACTGCTGTTAAGGGTAGTTTTGGGTACCTTGATCCTGAATACTTTAGAAGGCAGCAGCTCACAGAAAAATCTGATGTGTATTCATTTGGTGTGGTCCTAATGGAAGTCCTCTGCACCAGACCAGCTTTAAACCCTGTTCTACCAAGGGAGCAGGTTAATATAGCAGAATGGGCAATGAGCTGGCAAAAGAAGGGTATGCTGGATCAAATCATGGATCCAAATCTGGTTGGGAAGGTGAATCCAGCTTCTCTTAAGAAGTTCGGAGAGACAGCTGAGAAGTGCTTGGCTGAGCATGGGGTTGACAGGCCGTCAATGGGGGATGTCTTGTGGAATCTAGAATATGCTCTCCAGCTTGAGGAGACGTCATTGGCTCTTACAGAACCTGAAGATAACAGCACAAATCATATTGCAGGTATTCAGTTGACACCAATCGAGCAATTTGAGAACAGCGTTAGTATGATTGATGGGGTGCACTCTGGCACAGACGATGATGCAGAAGATGCAGCTACAAGTGCTGTATTCTCTCAGCTAGTAAACCCTCGTGGAAGATGA 1872 0.4455 MGGPLLTAQNDTLGRTWENDEKYLHVNSSAKNLSVNPGNIKYTTAVTTETAPNLVYSTAESMGNANQWELQYNLGFLYFMYFVRVHFCDILSTSLNNLVFNLFINSDIALESLDLSSLTGDLSVPYYKDFISNSSADSDVLTVSVGPDTMADVTNAIMNGLEIMRISNGAKSLDGLSSVESLLPQPPTKRNMIGIIIGCVVGASVAVVFIILCICCFVACRSKTPTQGHPWLPLPLYGNSQTMTKMSTTSQKSGTASCISLASTNLGRLFMFQEIMDATNKFDESLLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPSLSWKQRLEICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMSWQKKGMLDQIMDPNLVGKVNPASLKKFGETAEKCLAEHGVDRPSMGDVLWNLEYALQLEETSLALTEPEDNSTNHIAGIQLTPIEQFENSVSMIDGVHSGTDDDAEDAATSAVFSQLVNPRGR* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0330 623 CDD STKc_IRAK 288 553 - -
Vvi19g0330 623 FunFam Receptor-like protein kinase FERONIA 358 574 - -
Vvi19g0330 623 Pfam Malectin-like domain 6 165 IPR024788 -
Vvi19g0330 623 Gene3D Phosphorylase Kinase; domain 1 240 357 - -
Vvi19g0330 623 Pfam Protein tyrosine and serine/threonine kinase 288 548 IPR001245 GO:0004672|GO:0006468
Vvi19g0330 623 SMART serkin_6 282 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0330 623 FunFam Receptor-like protein kinase FERONIA 1 168 - -
Vvi19g0330 623 Gene3D Transferase(Phosphotransferase) domain 1 358 576 - -
Vvi19g0330 623 SUPERFAMILY Protein kinase-like (PK-like) 261 553 IPR011009 -
Vvi19g0330 623 Gene3D - 1 167 - -
Vvi19g0330 623 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Vvi19g0330 623 FunFam receptor-like protein kinase FERONIA 243 357 - -
Vvi19g0330 623 PANTHER OS07G0166700 PROTEIN 268 559 IPR045272 GO:0004714|GO:0006468
Vvi19g0330 623 ProSiteProfiles Protein kinase domain profile. 282 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0330 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0330 Vvi-Chr19 3559221 3561354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0330 1 623 Receptor kinase-like Gene Family AT3G46290 53.488 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi19g0330 PK_Tyr_Ser-Thr 4.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0330 - - vvi:100241800 1189.48