Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0320 ATGGAGAGCACCGATTCATCTTCGGGCTCGCCGCAGCCGCAGCTTCCACCGGGGTTCCGCTTTCACCCCACCGATGAAGAGTTAGTAGTTCACTATCTGAAGAAGAAGGCCTCATCTGCTCCTCTTCCGGTCGCCATAATCGCAGAGGTTGATCTCTATAAGTTTGATCCCTGGGAACTCCCCGCTAAGGCCAGTTTTGGAGAACAGGAATGGTACTTCTTCAGCCCTAGAGACCGGAAGTACCCAAACGGGGCTCGGCCTAATCGAGCGGCGACTTCTGGTTATTGGAAGGCGACGGGGACGGACAAGCCGGTGTTGACCTCTGGGGGTACTCAGAAGGTGGGTGTGAAGAAGGCGCTGGTTTTCTATGGAGGGAAGCCCCCAAAGGGGATCAAAACCAATTGGATCATGCATGAGTACAGGCTTGCTGACAACAAGGTTAACACAAAGCCTCCCGGATGCGATATGGGCAACAAGAAGAACTCTTTGCGGAACAACACGCATAGAACGCTGGATCCTGACAAGGATGACTCCATGGACGACATGCTTGGGCCGGTGCCGACCTCGATCTCGATGGGGCAACAAAGCCTGAAACTGCAGTTCCCAAAGGTCCCAAACTACAGTGCATTGCTAGAAAATGAGCAGAGCCTGTTTGAAGGGATGATAAACAGCGATGGTATCAACAGTTCCGGCACTATTTCTCAGCTGGCCTGCTCAAGCTCAAAGCCGGATCACCTCTCCTTGGTTGCAGCCACAACATCAAGCATCCTCCCTCTGAAGCGAACGCTCCCTTCTCTATACTGGAACGACGATGATACTGCCGGTCCTTCCACGACAAAGAGGTTCCAAGCCGAAAACACAGATGGAAACATTGGTAGAACAACTGATGGGAACAATTCCATCGCCACTCTGCTCAGCCAGCTTCCGCAGACTCCTTCATTGCACCAACAGTCAATGCTGGGGTCTCTTGGCGAAGGCGTTTTCCGGCAACCCTTTCAACTCCCTGGCATGAATTGGTATGCTTAG 1026 0.5273 MESTDSSSGSPQPQLPPGFRFHPTDEELVVHYLKKKASSAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRLADNKVNTKPPGCDMGNKKNSLRNNTHRTLDPDKDDSMDDMLGPVPTSISMGQQSLKLQFPKVPNYSALLENEQSLFEGMINSDGINSSGTISQLACSSSKPDHLSLVAATTSSILPLKRTLPSLYWNDDDTAGPSTTKRFQAENTDGNIGRTTDGNNSIATLLSQLPQTPSLHQQSMLGSLGEGVFRQPFQLPGMNWYA* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0320 341 SUPERFAMILY NAC domain 9 147 IPR036093 GO:0003677|GO:0006355
Vvi19g0320 341 MobiDBLite consensus disorder prediction 1 20 - -
Vvi19g0320 341 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Vvi19g0320 341 MobiDBLite consensus disorder prediction 148 180 - -
Vvi19g0320 341 MobiDBLite consensus disorder prediction 277 298 - -
Vvi19g0320 341 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Vvi19g0320 341 ProSiteProfiles NAC domain profile. 15 159 IPR003441 GO:0003677|GO:0006355
Vvi19g0320 341 PANTHER NAC TRANSCRIPTION FACTOR 56 15 180 - -
Vvi19g0320 341 FunFam NAC transcription factor 56 24 171 - -
Vvi19g0320 341 MobiDBLite consensus disorder prediction 165 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0320 Vvi-Chr19 3429401 3430645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0320 1 341 NAC Transcription Factor Family AT3G15510 54.111 3.42e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi19g0320 NAM 5.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0320 - - vvi:100248744 681.789