Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0319 ATGGGTGTACCGGAGACTGACCCGCTTTCACAGCTTAGTTTGCCGCCTGGGTTCCGATTTTATCCCACCGATGAGGAGCTTCTGGTGCAGTATCTCTGCCGGAAAGTGGCCGGACAGGGGTTTTCATTGGAGATAATTGGCGAAATCGATCTGTACAAGTTTGACCCATGGGTTCTTCCCAGTAAAGCTATATTTGGAGAGAAAGAGTGGTACTTTTTCAGTCCCAGAGATCGGAAGTACCCAAATGGGTCCAGACCCAATAGGGTTGCTGGGTCTGGGTATTGGAAGGCCACCGGAACTGATAAGGTGATTACCACCGAGGGCCGGAAAGTTGGCATCAAGAAAGCTCTGGTGTTTTACGTCGGCAAAGCTCCAAAAGGAACCAAAACTAATTGGATCATGCATGAGTACAGACTCCTAGAAAATTCGAGGAAAAATGGAAGCTCCAAGTTGGATGATTGGGTTCTGTGCCGAATTTACAAGAAGAATTCCAACTCTTCGAAACCCATAGCAGCTGTACTTCCCAGCAAAGCGCACAGCAACGGCTCGTCATCGTCATCGTCGTCCCACCTCGACGACGTCCTGGAGTCGCTGCCGGAGATCGATGACAGGTTCTTTTCTCCTAATCGGATGAATTCTCTGAGAGTTTCACAGCCGGACGAGAAAGTCAACTTCCATAACCTGGGCTCGGGCAACTTCGACTGGGCCACTCTAGCAGGCGTCTCCTCCTTGCAGGAGTTGGTCTCCGGCGTCCAATCCCACGCCCAGCCTCCCGCAGCTGTCAACAACAGCAACGAAATGTACGTTCCGTCACTGCCGCCGCTAATCCAAGCCGAAGAAGAAGTCCAGAGCGGACTCAGAACCCAGAGAGTCGACCCAGTAATGAACCAAGGGTTCTTCCCGCAGAACTCGAACGCGTTCAGTCAGAGTTTCTCTAACTCACTCGACCCGTTCGGGTTTCGGTACCCGACCCAACCTAGTGGATTTGGATATAGGCAGTAA 1002 0.516 MGVPETDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGQGFSLEIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLENSRKNGSSKLDDWVLCRIYKKNSNSSKPIAAVLPSKAHSNGSSSSSSSHLDDVLESLPEIDDRFFSPNRMNSLRVSQPDEKVNFHNLGSGNFDWATLAGVSSLQELVSGVQSHAQPPAAVNNSNEMYVPSLPPLIQAEEEVQSGLRTQRVDPVMNQGFFPQNSNAFSQSFSNSLDPFGFRYPTQPSGFGYRQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0319 333 Gene3D NAC domain 23 167 IPR036093 GO:0003677|GO:0006355
Vvi19g0319 333 FunFam NAC domain-containing protein 72-like 23 167 - -
Vvi19g0319 333 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Vvi19g0319 333 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 241 - -
Vvi19g0319 333 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vvi19g0319 333 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0319 Vvi-Chr19 3412635 3413832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0319 1 331 NAC Transcription Factor Family AT1G52890 58.187 1.53e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi19g0319 NAM 7.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0319 - - vvi:100243607 645.195