Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0318 ATGGTGGACATTAAGGCACAACCAGAGTCTATTACAGCAAACCCTGAACCACCACCCATCTTTACGAAAGCTAAGAACAGTGGCCATGTTATATTGAAGTTTGAGGAGGTTGATTACAAGGCTAAAACCCATAAAGGAGGACTGCTTAGGAAGGATTCGAAACCAGAGGAGAAGCACATATTGAAGGGAATCACAGGCATTGTGCTACCAGGTGAAATGCTGGCCATGTTAGGCCCATCAGGCAGTGGCAAAACAACACTGCTTACTGCCCTTGGAGGTCGTCTTGGTGGACGGCTCAATGGAAGCATAACCTACAATGGCAAGCCCTTTTCAAACCGAATGAAGAGGAGCACAGGGTTTGTAACACAAGATGATGTTCTTTATCCACATCTAACTGTGACTGAGACATTAGTATTCACTGCCCTTCTCCGGTTGCCTAATACTATTAGTAAAGAAGACAAGGTACGGCATGCGGAGGCAGTGATAACTCAGCTTGGTTTAACTAAGTGCAAGGATAGTATAATTGGGAACCCCTTTCTGAGAGGGGTTTCGGGGGGAGAGCGTAAAAGGGTTAGCATAGGGCAAGAGATGCTAATAAACCCTAGTCTACTGTTTTTGGATGAGCCCACATCCGGCCTCGACTCAACAACTGCTCAACGCATCGTGTCCACGTTATGGGAGCTAGCGAAAGGAGGAAGAACCGTTGTGATGACGATACACCAGCCTTCTAGTAGACTATTTTACATGTTTCATAAGGTGTTATTGTTATCAGAAGGGAACCCTTTATATTTTGGGAAGGGAGCAGAAGCCATGGACTACTTTTCTAGCATTGGATTTGCCCCATCAGTTGCAATGAATCCGTCTGATTTTCTACTAGATCTTGCCAATGGTGTTTTGTCTGATGATATACATGAGGATCCAACCACCATCAAGCAGACACTGGTTTTATCATATAGGAGCAAGATTGATGAAGGACTGAAGGCAGAACTCCGAGAAATCGATAACCACCTTCAAGACGGATTAGAAGACAAGCAGCTAGACCGGTGGGCGACAACTTGGTGGCAGCAGTGCTCTGTGTTGTTTAGAAGAGGGGTAAAGGAAAGGAGGCATGAATCATTCTCTGGCCTCAAGATTGGTCAGGTCCTGGTTGTGGGCTTCCTTTCAGGGTTATTGTGGTGGCAATCTGATTCTTCACACCTGCAAGATCAGATTGGGCTTCTCTTCTTTTGCTCTGGATTTTGGGGCTTCTTCCCTCTGTTCCAAGCTATTTTCACCTTCCCCCAGGAGCGGATGATGCTTGAAAAGGAAAGATCTTCAGGCATGTACAGGCTTTCATCATACTTCATGTCAAGGACCATAGGTGACCTTCCCATGGAGCTGGTTCTTCCCACCATTTTTGTTATCATAACCTATTGGATGGCAGGCCTCAAACCCAATGCCATTAACTTCCTACACACCTTATTTGCCCTCCTATTTAGCGTACTAGTTTCTCAAAGCCTCGGCCTTGCTCTGGGTGCTGCAGTAATGGACCAAAAATCAGCCACCATACTAGGATCAGTAATCATGCTCTCATTCCTTCTTGCGGGAGGGTACTATGTCCAAAATGTTCCCCATTTCATAGCTTGGATTAAATACGTCTCTATTAGCCATTACACATATAAACTGTTGTTGGGTTCACAATACAAGCCTGGAGACATCTACCCATGTTCTGCCAAGACCACCTGTTTGGTGGGAGACTTTCCTGCTGTACAGCTTGTGGGCCTAGACAAGCAAATCCTTGCGGCGGTTGCTTTGGCCATAATGCTTGTGGGTTACCGGCTTATCGCTTATATTGCCCTCATGAGGATTGGAGTGCCCGGTAAAAATAGCTAG 1872 0.4589 MVDIKAQPESITANPEPPPIFTKAKNSGHVILKFEEVDYKAKTHKGGLLRKDSKPEEKHILKGITGIVLPGEMLAMLGPSGSGKTTLLTALGGRLGGRLNGSITYNGKPFSNRMKRSTGFVTQDDVLYPHLTVTETLVFTALLRLPNTISKEDKVRHAEAVITQLGLTKCKDSIIGNPFLRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELAKGGRTVVMTIHQPSSRLFYMFHKVLLLSEGNPLYFGKGAEAMDYFSSIGFAPSVAMNPSDFLLDLANGVLSDDIHEDPTTIKQTLVLSYRSKIDEGLKAELREIDNHLQDGLEDKQLDRWATTWWQQCSVLFRRGVKERRHESFSGLKIGQVLVVGFLSGLLWWQSDSSHLQDQIGLLFFCSGFWGFFPLFQAIFTFPQERMMLEKERSSGMYRLSSYFMSRTIGDLPMELVLPTIFVIITYWMAGLKPNAINFLHTLFALLFSVLVSQSLGLALGAAVMDQKSATILGSVIMLSFLLAGGYYVQNVPHFIAWIKYVSISHYTYKLLLGSQYKPGDIYPCSAKTTCLVGDFPAVQLVGLDKQILAAVALAIMLVGYRLIAYIALMRIGVPGKNS* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0318 623 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 29 610 - -
Vvi19g0318 623 SMART AAA_5 70 260 IPR003593 GO:0016887
Vvi19g0318 623 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 32 283 IPR003439 GO:0005524
Vvi19g0318 623 Pfam ABC-2 type transporter 240 336 IPR043926 GO:0140359
Vvi19g0318 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 277 IPR027417 -
Vvi19g0318 623 ProSitePatterns ABC transporters family signature. 183 197 IPR017871 GO:0005524|GO:0016887
Vvi19g0318 623 Pfam ABC transporter 62 211 IPR003439 GO:0005524
Vvi19g0318 623 CDD ABCG_EPDR 29 265 - -
Vvi19g0318 623 Pfam ABC-2 type transporter 355 561 IPR013525 GO:0016020|GO:0140359
Vvi19g0318 623 Gene3D - 49 277 IPR027417 -
Vvi19g0318 623 FunFam ABC transporter G family member 22 48 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0318 Vvi-Chr19 3404282 3407783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0318 53 244 Calmodulin-binding Proteins AT2G36910 29.798 7.08e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0318 K05681 - vvi:100265848 1221.45