Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0309 ATGGATGATGCTAATAGTAGTGTATCAAATCAAGAGAATGAAGATGTTGGCAACATGGCTCGGACTGTACTGAACCGGAATCCAGGTAAAGACAAGGGCAAGAGACGTTGTATTGGCTCAGAGAAGAAACTGTTAAAGCCAGCCATGGAAGAGTCATTGATGCTGAATAGGCCTCTTAAGAGGGTCAGAAGCCTGGAACATCAAATCCCAATTCAACGACCTTCTCATTTCATCCATCAAATGGCTCCAAATCCTATTTCTTCTCCAGCTTCCTTAAGGTTTGGTCTTCCCTTTTCCATGCCAACCCATGTGGAGCAACAAATGATCTCTTTTTCACCAAATGACTCTGAGTTGGAGCCTTACTCGAACCATAGGCTTCTCCAGTATTGGAGCAGTGTGCTTAATCTAAGTCCTCGAGGAAGAACGATGATGCCAACAATGCTGACAAATGGACTAGTCCAAGATGGAGGTGGTGTTTTTAGGCCTTCAACCATTGGTCCGCCCAACGCCAAGCTCTACAGAGGAGTGAGGCAACGCCAATGGGGCAAATGGGTGGCTGAGATACGTCTCCCTCGCAACAGGAGGCGCCTATGGTTAGGTACATTCGACACAGCAGAGGAGGCTGCTTTGGCCTATGACCGAGAGGCCTTCAAGCAAAGGGGAGAGAATGCACGCCTGAATTTCCCACATCTTTTCGTCCACCAGAAAAGTGAAGATATGGGAACCTTAATGGCTTCAAATTCAGCTTCTTCATATTTCTCCCATATCACCAATAAAAATCCCCTGCCCCAACAGAACCAACAGCATCTCCAGCAAGTCCAAGGAGAGACCAATTCACCAGTTTGGCAAATGGGAATGGTGCCTTCAGCGCTTGGGCATAGTCCTAAAAAAGATTTGGCCAAGCCCAGCTTTAAGGGCAAGTGTCCTGCTGATCTACGATCAAGCGAGATCACAGTCCAGGCTCAGGCACTCACACCAGGTTCTGGAACAGGGGAAGGCATATCTGAATTTTCCAATCCTGTATGGGGTGATACGACAGAGACTTGGTACAATTCAGTTTCAGCAGGTATGGTTCCTGTTAGCCCATTATGGGATTATTTTGATGCTGCAAATCATCTATTACCACAACCCAGAACAACTTTCCCTAGCTCTCAGCCACAGGACAGTAGTAGCACTACTGTCCAACAGCCCCAAGATAATTATGCAGCCTAA 1212 0.4695 MDDANSSVSNQENEDVGNMARTVLNRNPGKDKGKRRCIGSEKKLLKPAMEESLMLNRPLKRVRSLEHQIPIQRPSHFIHQMAPNPISSPASLRFGLPFSMPTHVEQQMISFSPNDSELEPYSNHRLLQYWSSVLNLSPRGRTMMPTMLTNGLVQDGGGVFRPSTIGPPNAKLYRGVRQRQWGKWVAEIRLPRNRRRLWLGTFDTAEEAALAYDREAFKQRGENARLNFPHLFVHQKSEDMGTLMASNSASSYFSHITNKNPLPQQNQQHLQQVQGETNSPVWQMGMVPSALGHSPKKDLAKPSFKGKCPADLRSSEITVQAQALTPGSGTGEGISEFSNPVWGDTTETWYNSVSAGMVPVSPLWDYFDAANHLLPQPRTTFPSSQPQDSSSTTVQQPQDNYAA* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0309 403 FunFam Ethylene-responsive transcription factor 2 171 230 - -
Vvi19g0309 403 MobiDBLite consensus disorder prediction 1 20 - -
Vvi19g0309 403 MobiDBLite consensus disorder prediction 376 403 - -
Vvi19g0309 403 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Vvi19g0309 403 PRINTS Ethylene responsive element binding protein signature 195 211 IPR001471 GO:0003700|GO:0006355
Vvi19g0309 403 CDD AP2 171 231 IPR001471 GO:0003700|GO:0006355
Vvi19g0309 403 MobiDBLite consensus disorder prediction 375 403 - -
Vvi19g0309 403 Gene3D AP2/ERF domain 172 230 IPR036955 GO:0003700|GO:0006355
Vvi19g0309 403 MobiDBLite consensus disorder prediction 1 39 - -
Vvi19g0309 403 SUPERFAMILY DNA-binding domain 172 230 IPR016177 GO:0003677
Vvi19g0309 403 ProSiteProfiles AP2/ERF domain profile. 172 229 IPR001471 GO:0003700|GO:0006355
Vvi19g0309 403 Pfam AP2 domain 173 221 IPR001471 GO:0003700|GO:0006355
Vvi19g0309 403 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 23 367 - -
Vvi19g0309 403 SMART rav1_2 172 235 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0309 Vvi-Chr19 3327575 3328786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0309 105 368 AP2-EREBP Transcription Factor Family AT4G28140 39.245 5.85e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi19g0309 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0309 - - vvi:104877562 793.112