Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0283 ATGTTTGCAATTCACTTTTCTTCTCATTTTCTTTGGCGATTTTTCTTTGTTGTTGGTGTGGTTTTGGAGGGGATTGGTCATGGGTTGGCCGATGGGTGGTTCGACGCTCATGCCACTTTTTATGGGGCCAATCAAAGCCCCTCCACCCTTGGTGAGTTTAGATTAATTATGGGCTCTTTTTTTTTTCTTTTGAATATAATCCAAAATAAATTGTATTGTTATTTAACTTATTTTGTAGGAGGAGCTTGCGGTTATGATAACACAGTCCATGCTGGGTTTGGAGTCAACACAGCAGCAGTGAGTGGCGCGTTGTTTAGACAAGGCGAGGCCTGCGGCGCCTGCTACCTGGTCATGTGCAACTACTGGCTCGACCCCAAGTGGTGTCTCCACCGCGCCACTGTCACTATCACCGCCACCAACTTCTGCCCTCCCAACAACAACGGCGGCTGGTGTGATCCTCCTCGTCAGCATTTCGACATGTCCATGCCCGCCTTCCTTCGCATGGCTAGACAGGGCAACGAAGGCATAGTTCCAGTACTTTACAAAAGGATATCATGTAAAAGGAGGGGCGGAGTCCATTTCACATTGAAGGGACAATCGAACTTCAACATGGTGATGATCTCGAACGTGGGCGGTAGCGGAGACGTGAGGGCGGCGTGGATAAGAGGGTCGAGGACGGGGACATGGGTGGCCATGCACAGAAACTGGGGTGCAAACTGGCAGAGCAGCGTGGATCTTAGGAGCCAAAACCTTTCCTTCAAGCTCACTTTGGTCGATGGAAAGACACTGGAATTCTATAACGTCGTGCCTTCAACATGGAGCTTTGGACAGACTTTTGCTTCAGAGAATCAGTTCACTTAG 861 0.4913 MFAIHFSSHFLWRFFFVVGVVLEGIGHGLADGWFDAHATFYGANQSPSTLGEFRLIMGSFFFLLNIIQNKLYCYLTYFVGGACGYDNTVHAGFGVNTAAVSGALFRQGEACGACYLVMCNYWLDPKWCLHRATVTITATNFCPPNNNGGWCDPPRQHFDMSMPAFLRMARQGNEGIVPVLYKRISCKRRGGVHFTLKGQSNFNMVMISNVGGSGDVRAAWIRGSRTGTWVAMHRNWGANWQSSVDLRSQNLSFKLTLVDGKTLEFYNVVPSTWSFGQTFASENQFT* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0283 286 SUPERFAMILY Barwin-like endoglucanases 66 209 IPR036908 -
Vvi19g0283 286 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576
Vvi19g0283 286 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Vvi19g0283 286 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Vvi19g0283 286 Gene3D - 26 187 IPR036908 -
Vvi19g0283 286 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 80 191 IPR007112 -
Vvi19g0283 286 Pfam Expansin C-terminal domain 192 270 IPR007117 -
Vvi19g0283 286 CDD DPBB_EXPA_N 32 186 - -
Vvi19g0283 286 Pfam Lytic transglycolase 97 181 IPR009009 -
Vvi19g0283 286 PANTHER EXPANSIN-A15 14 284 IPR002963 GO:0009664
Vvi19g0283 286 SMART dpbb_1 97 181 IPR007112 -
Vvi19g0283 286 PRINTS Expansin signature 92 106 IPR002963 GO:0009664
Vvi19g0283 286 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Vvi19g0283 286 PRINTS Expansin signature 134 144 IPR002963 GO:0009664
Vvi19g0283 286 PRINTS Expansin signature 238 259 IPR002963 GO:0009664
Vvi19g0283 286 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Vvi19g0283 286 PRINTS Expansin signature 267 283 IPR002963 GO:0009664
Vvi19g0283 286 PRINTS Expansin signature 148 165 IPR002963 GO:0009664
Vvi19g0283 286 PRINTS Expansin signature 121 132 IPR002963 GO:0009664
Vvi19g0283 286 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 281 IPR007117 -
Vvi19g0283 286 SUPERFAMILY PHL pollen allergen 188 281 IPR036749 -
Vvi19g0283 286 Gene3D - 191 286 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0283 Vvi-Chr19 3020095 3021255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0283 30 284 Expansin Gene Family AT3G15370 61.868 1.21e-116 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0283 - - vvi:100260630 538.88