Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0282 ATGAATGACACGTGGCGGATAATGAGTGGGTGGAAGTTAGAAAATGGTCAACATCAACCAATAGGAGAAGAGCTTCAGTTTGCCGTTTCAAGACGTAAAACGCGCTCCGCCCCGCTGTCTTTATATACAACGCCCTTTTTCATCGCCGGTCATCATCTCTCTCTACTACGTTCGCTTTTCGCCGTGAGGATTTTGCTACGAAGTAATCGATTCCGTGTTCTTCATCCTTGTTTTGACTCCGATCGCATGGCCTTAGAACAGGACTTCCCAGAGCTTGCAGCACAACACGAATCTGACGGAGATGTTTCACTCCAGAAAAAATGGAAAGCCATCTCAGCTTCAGAAGCTGCCTCGGAAAATTCTAATGGCAGTTTTGATTGCAACATCTGCTTAGACTCTGCCCATGACCCCGTCGTCACCCTCTGTGGCCACTTGTACTGCTGGCCCTGCATATACAAGTGGCTCCATGTCCAGAGCACCTCCCCTGTTACAGAGCAGCAGCAGAACTGCCCCGTCTGTAAAGCCAACATCTCCCACACTTCACTAGTCCCCCTTTACGGCCGTGGCCCATCCCCATCTGAATCAGAAACAAAGAAGCTCCACGTTGGCCCTGCTATACCCCGCAGGCCGCCAGCTCATGGGGTGCACACGTTGATAACTACGACTACTTCAGCCTCTTTGAACTCTCATCCAAGTCGGCATCTTCATCCTAATCCTTTCCAGTCACATTCACAATACTTTCCCCACCCTTATGGTGGTTATGCTGCCACTCCAACATTGACCAGCGTATTGAATCCAACTATTGGGATGTTTGGAGAGATGGTTTTCTCTAGGATGTTTGGGAGCTCAGACACAAGTTTGTTCGCCTATCCCTATCCGAATACTTATCCTCTGATGGCCAGTGCCAATCCTAGGATGAGAAGGCAGGAAATGCAGCTAGACAGATGTCTCAACAGAGTATCCATCTTTCTCTTCTGTTGCTTTATTCTTTGTCTTCTCTCGTTCTGA 1008 0.4861 MNDTWRIMSGWKLENGQHQPIGEELQFAVSRRKTRSAPLSLYTTPFFIAGHHLSLLRSLFAVRILLRSNRFRVLHPCFDSDRMALEQDFPELAAQHESDGDVSLQKKWKAISASEAASENSNGSFDCNICLDSAHDPVVTLCGHLYCWPCIYKWLHVQSTSPVTEQQQNCPVCKANISHTSLVPLYGRGPSPSESETKKLHVGPAIPRRPPAHGVHTLITTTTSASLNSHPSRHLHPNPFQSHSQYFPHPYGGYAATPTLTSVLNPTIGMFGEMVFSRMFGSSDTSLFAYPYPNTYPLMASANPRMRRQEMQLDRCLNRVSIFLFCCFILCLLSF* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0282 335 CDD RING-HC_AtRMA-like 125 175 - -
Vvi19g0282 335 SMART ring_2 127 173 IPR001841 -
Vvi19g0282 335 SUPERFAMILY RING/U-box 120 179 - -
Vvi19g0282 335 ProSiteProfiles Zinc finger RING-type profile. 127 174 IPR001841 -
Vvi19g0282 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 186 IPR013083 -
Vvi19g0282 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 93 332 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vvi19g0282 335 ProSitePatterns Zinc finger RING-type signature. 142 151 IPR017907 -
Vvi19g0282 335 Pfam Zinc finger, C3HC4 type (RING finger) 127 173 IPR018957 GO:0046872
Vvi19g0282 335 MobiDBLite consensus disorder prediction 187 213 - -
Vvi19g0282 335 FunFam E3 ubiquitin-protein ligase RMA1H1 100 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0282 Vvi-Chr19 3010026 3013436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0282 94 321 C3H Transcription Factor Family AT4G27470 43.644 1.28e-53 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0282 K10666 - vvi:100255559 652.514