Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi19g0282 | ATGAATGACACGTGGCGGATAATGAGTGGGTGGAAGTTAGAAAATGGTCAACATCAACCAATAGGAGAAGAGCTTCAGTTTGCCGTTTCAAGACGTAAAACGCGCTCCGCCCCGCTGTCTTTATATACAACGCCCTTTTTCATCGCCGGTCATCATCTCTCTCTACTACGTTCGCTTTTCGCCGTGAGGATTTTGCTACGAAGTAATCGATTCCGTGTTCTTCATCCTTGTTTTGACTCCGATCGCATGGCCTTAGAACAGGACTTCCCAGAGCTTGCAGCACAACACGAATCTGACGGAGATGTTTCACTCCAGAAAAAATGGAAAGCCATCTCAGCTTCAGAAGCTGCCTCGGAAAATTCTAATGGCAGTTTTGATTGCAACATCTGCTTAGACTCTGCCCATGACCCCGTCGTCACCCTCTGTGGCCACTTGTACTGCTGGCCCTGCATATACAAGTGGCTCCATGTCCAGAGCACCTCCCCTGTTACAGAGCAGCAGCAGAACTGCCCCGTCTGTAAAGCCAACATCTCCCACACTTCACTAGTCCCCCTTTACGGCCGTGGCCCATCCCCATCTGAATCAGAAACAAAGAAGCTCCACGTTGGCCCTGCTATACCCCGCAGGCCGCCAGCTCATGGGGTGCACACGTTGATAACTACGACTACTTCAGCCTCTTTGAACTCTCATCCAAGTCGGCATCTTCATCCTAATCCTTTCCAGTCACATTCACAATACTTTCCCCACCCTTATGGTGGTTATGCTGCCACTCCAACATTGACCAGCGTATTGAATCCAACTATTGGGATGTTTGGAGAGATGGTTTTCTCTAGGATGTTTGGGAGCTCAGACACAAGTTTGTTCGCCTATCCCTATCCGAATACTTATCCTCTGATGGCCAGTGCCAATCCTAGGATGAGAAGGCAGGAAATGCAGCTAGACAGATGTCTCAACAGAGTATCCATCTTTCTCTTCTGTTGCTTTATTCTTTGTCTTCTCTCGTTCTGA | 1008 | 0.4861 | MNDTWRIMSGWKLENGQHQPIGEELQFAVSRRKTRSAPLSLYTTPFFIAGHHLSLLRSLFAVRILLRSNRFRVLHPCFDSDRMALEQDFPELAAQHESDGDVSLQKKWKAISASEAASENSNGSFDCNICLDSAHDPVVTLCGHLYCWPCIYKWLHVQSTSPVTEQQQNCPVCKANISHTSLVPLYGRGPSPSESETKKLHVGPAIPRRPPAHGVHTLITTTTSASLNSHPSRHLHPNPFQSHSQYFPHPYGGYAATPTLTSVLNPTIGMFGEMVFSRMFGSSDTSLFAYPYPNTYPLMASANPRMRRQEMQLDRCLNRVSIFLFCCFILCLLSF* | 336 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi19g0282 | 335 | CDD | RING-HC_AtRMA-like | 125 | 175 | - | - | |
Vvi19g0282 | 335 | SMART | ring_2 | 127 | 173 | IPR001841 | - | |
Vvi19g0282 | 335 | SUPERFAMILY | RING/U-box | 120 | 179 | - | - | |
Vvi19g0282 | 335 | ProSiteProfiles | Zinc finger RING-type profile. | 127 | 174 | IPR001841 | - | |
Vvi19g0282 | 335 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 186 | IPR013083 | - | |
Vvi19g0282 | 335 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 93 | 332 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Vvi19g0282 | 335 | ProSitePatterns | Zinc finger RING-type signature. | 142 | 151 | IPR017907 | - | |
Vvi19g0282 | 335 | Pfam | Zinc finger, C3HC4 type (RING finger) | 127 | 173 | IPR018957 | GO:0046872 | |
Vvi19g0282 | 335 | MobiDBLite | consensus disorder prediction | 187 | 213 | - | - | |
Vvi19g0282 | 335 | FunFam | E3 ubiquitin-protein ligase RMA1H1 | 100 | 194 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi19g0282 | Vvi-Chr19 | 3010026 | 3013436 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi19g0282 | 94 | 321 | C3H Transcription Factor Family | AT4G27470 | 43.644 | 1.28e-53 | 174 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi19g0282 | K10666 | - | vvi:100255559 | 652.514 |