Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0272 ATGGATCTCGACCTCATCATAATCCGTTATAGTATGCTTGGTTTCCTCGTCATGCTTCTTGTCCTCCCCCTCTGGGATAGGCTTTTCCTGCCGTTCATCAGGTCCCGGAGAATCCACGAGCCTGAGCTGGGAGGATCGTCAGATTTTGAACAAGATTCTGAAGAAGATGAGATTGAGACGATAGTGCAGGTGAAGAGGCTATCCCAAACACGGTTTCATCTGGCATTAGAACAGCTCCCACCTCTGACGAACTACAGAAGCCGCAGCAGCAGCCCAGGAACATCCATATATGGCGGCTGCCCCATATGTTTGGAGGATTTCGAGGAGGGAGAGTCGTGTCAGGTTATTCCAGAGTGCAACCATATTTTCCATTGGCCATGCATTGCAGAATGGTTGATGGAGAATCAGACATGTCCAGTTTGTCGTCGCTTGCTTTTACCCAGAAAGAAAGCATATAAATTTCCAATTCCTTCTTACTGA 480 0.4771 MDLDLIIIRYSMLGFLVMLLVLPLWDRLFLPFIRSRRIHEPELGGSSDFEQDSEEDEIETIVQVKRLSQTRFHLALEQLPPLTNYRSRSSSPGTSIYGGCPICLEDFEEGESCQVIPECNHIFHWPCIAEWLMENQTCPVCRRLLLPRKKAYKFPIPSY* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0272 159 CDD RING-H2_EL5-like 100 142 - -
Vvi19g0272 159 SMART ring_2 100 141 IPR001841 -
Vvi19g0272 159 SUPERFAMILY RING/U-box 99 148 - -
Vvi19g0272 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 146 IPR013083 -
Vvi19g0272 159 Pfam Ring finger domain 100 142 IPR001841 -
Vvi19g0272 159 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Vvi19g0272 159 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 16 142 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0272 Vvi-Chr19 2881587 2882066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0272 75 147 C3H Transcription Factor Family AT2G17450 43.421 6.32e-15 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0272 - - vvi:104877557 317.39