Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0264 ATGGCCGGGAGATCAGGCCACGATTCCTCCATGATCGTCACCAACACCCCAGCTAGAGATCTCGTCCACACCAATTTCGCCTACTGCTCCCCCTCCGATCTCCGCAAGTTCGCCGTTCATGGATCCAATCTCGCTCTCGCATCGGTTGGGGATTCATGCGTTCTTTCTATTTCTGCCCATGAGAGCATTCCTAATGGTCATATTGCTCTTAATGCTATCCAACGTCGCCATGCGAGAGTTTCTACGGGGGACTCAGTATCTGTGAGCAGATTTATCCCACCTGATGACTTCAACCTAGCATTGCTCACTCTGGAGTTGGAGTTTGTGAAAAAAGGGACTAAAGATGAACAGATTGATGCTGTTCAGTTGTCTCAGCAACTTAGGAAGAGATTTATTAACCAGGTTATGACAACAGGACAGAGGGTAACATTTGAGTATCATGGCAATGGTTATATTTTCACAGTTAATCAGGCGGTCATAGAAGGGCAAGAAAAATCAAAAGGTATTGAAAGAGGGATAATTGCAGCTGAAACGTATATTATTTTTGAAGCACCAAATTCCAGTGGAATAAAGATTGTGAACCAGCGGGAGGCTGCTAGTAGCAACATCTTTAGGCAGAAAGAGTTTAATCTCCAGTCACTCGGTATAGGTGGTCTAAGTGCAGAGTTTGCGGATATATTTCGAAGAGCTTTTGCCTCTAGAGTTTTTCCTTCCCATGTGACCAGCAGACTAGGCATCAAGCATGTCAAGGGAATGCTGCTTTATGGACCTCCTGGTACTGGGAAGACACTAATGGCTCGCCAGATTGGAAAGATGTTAAATGGCAGGGAACCAAAGATTGTGAATGGGCCTGAAGTGCTAAGTAAGTTTGTTGGTGAAACTGAGAAGAATGTTAGAGATTTATTTGCTGATGCCGAGAATGACCAAAGAACTCGCGGTGATCAAAGTGACTTGCATGTTATCATTTTTGATGAAATTGATGCAATTTGTAAGTCAAGAGGTTCCACTAGAGATGGTACTGGGGTTCATGATAGCATTGTTAACCAGCTCCTTACAAAGATAGATGGTGTCGAGTCTTTGAATAACGTTTTGCTCATCGGAATGACTAACAGAAAGGATTTGCTGGATGAAGCACTTCTGAGGCCTGGACGTTTGGAGGTTCAAGTGGAGATAAGCCTCCCTGATGAGAATGGTCGTTTACAAATTCTTCAAATTCATACAAACAAAATGAAAGAAAATTCTTTTCTCGCTCCAGATGTGAACTTGCAAGAGCTTGCTGCTCGGACAAAGAACTATAGTGGGGCAGAGCTTGAAGGCGTTGTAAAAAGTGCAGTATCATTTGCTTTGAATCGGCAACTAAGCATGGATGATCTTACTAAGCCAGTGGATGAGGAGAGTATAAAAGTCACCATGGAGGATTTTCTGAATGCCCTCCAAGAGATTATTCCTGCATTTGGAGCCTCCACAGATGACCTTGAACGGTGCAGAGTTAATGGCATGGCTGAATGTGGGTCACGACATGAGCACATATATCAAAGAGCCATGCTGTTGGTGGAGCAAGTAAAAGTGAGCAAAGGAAGCCCACTTATTACCTGTCTTCTGGAAGGCCCAAGTGGCAGTGGTAAGACTTCACTGGCAGCTACTGTTGGTATTGACAGTGATTTCCCCTATGTCAAGATTATTTCTGCAGAATCAATGATTGGCCTTAGCGAAAGCAGTAAATGTGCAAGGATTGTCAAGGTATTTGAGGATGCTTATAAGTCACAATTAAGCATTATTGTTCTTGATGACATTGAAAGGTTAATAGAGTATGTTGCAATCGGTCCTCGTTTTTCAAATATAATTTCTCAAACACTGTTGGTCCTCATCAAGCGGCTTCCTCCAAAGGGCAAAAACGTGTTAGTGATCGGGACAACAAGCGAAGTGTCTTTCTTAGATTCAGTTGGCATTCGTGATGCTTTCTCTGTCACATACCATGTTCCAACATTAAAGACAGAAGATGCTAAAAAGGTGTTACAACAGCTAAATGTTTTCTCAGATGATGACATCGATTCTGCTGCAGAGGCCCTGAATGATATGCCAATCAAGAAACTGTACATGTTAATTGAAATGGCCGCCCAGGGAGAACATGGTGGGGAGGCTGAGGCCATTTATTCAGGCAAAGAAAAAATCGCAATCTCTCATTTCTTTGATTGCCTTCAAGACATGATCCGATATTAG 2220 0.4306 MAGRSGHDSSMIVTNTPARDLVHTNFAYCSPSDLRKFAVHGSNLALASVGDSCVLSISAHESIPNGHIALNAIQRRHARVSTGDSVSVSRFIPPDDFNLALLTLELEFVKKGTKDEQIDAVQLSQQLRKRFINQVMTTGQRVTFEYHGNGYIFTVNQAVIEGQEKSKGIERGIIAAETYIIFEAPNSSGIKIVNQREAASSNIFRQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPSHVTSRLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGREPKIVNGPEVLSKFVGETEKNVRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSMDDLTKPVDEESIKVTMEDFLNALQEIIPAFGASTDDLERCRVNGMAECGSRHEHIYQRAMLLVEQVKVSKGSPLITCLLEGPSGSGKTSLAATVGIDSDFPYVKIISAESMIGLSESSKCARIVKVFEDAYKSQLSIIVLDDIERLIEYVAIGPRFSNIISQTLLVLIKRLPPKGKNVLVIGTTSEVSFLDSVGIRDAFSVTYHVPTLKTEDAKKVLQQLNVFSDDDIDSAAEALNDMPIKKLYMLIEMAAQGEHGGEAEAIYSGKEKIAISHFFDCLQDMIRY* 740
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0264 739 Gene3D - 8 91 - -
Vvi19g0264 739 FunFam Vesicular-fusion ATPase SEC18 204 394 - -
Vvi19g0264 739 Gene3D - 490 661 IPR027417 -
Vvi19g0264 739 FunFam Vesicle-fusing ATPase 95 192 - -
Vvi19g0264 739 Gene3D - 95 192 - -
Vvi19g0264 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 491 IPR027417 -
Vvi19g0264 739 Gene3D - 394 481 - -
Vvi19g0264 739 FunFam Vesicle-fusing ATPase 394 481 - -
Vvi19g0264 739 Gene3D - 203 393 IPR027417 -
Vvi19g0264 739 SMART CDC48_N_2 10 93 IPR003338 -
Vvi19g0264 739 SUPERFAMILY ADC-like 10 91 IPR009010 -
Vvi19g0264 739 Pfam Cell division protein 48 (CDC48), domain 2 117 160 IPR004201 -
Vvi19g0264 739 Pfam AAA+ lid domain 419 474 IPR041569 -
Vvi19g0264 739 SMART AAA_5 528 664 IPR003593 GO:0016887
Vvi19g0264 739 SMART AAA_5 248 395 IPR003593 GO:0016887
Vvi19g0264 739 Pfam ATPase family associated with various cellular activities (AAA) 533 660 IPR003959 GO:0005524|GO:0016887
Vvi19g0264 739 Pfam ATPase family associated with various cellular activities (AAA) 252 392 IPR003959 GO:0005524|GO:0016887
Vvi19g0264 739 CDD RecA-like_NSF-SEC18_r1-like 215 391 - -
Vvi19g0264 739 FunFam vesicle-fusing ATPase isoform X1 490 661 - -
Vvi19g0264 739 FunFam Vesicle-fusing ATPase protein 8 91 - -
Vvi19g0264 739 SUPERFAMILY Cdc48 domain 2-like 94 197 IPR029067 -
Vvi19g0264 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 703 IPR027417 -
Vvi19g0264 739 ProSitePatterns AAA-protein family signature. 363 381 IPR003960 GO:0005524|GO:0016887
Vvi19g0264 739 PANTHER VESICULAR-FUSION PROTEIN NSF 10 738 IPR039812 GO:0016887|GO:0035494
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi19g0264 Vvi-Chr19 2793644 2811295 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0264 216 467 Calmodulin-binding Proteins AT3G56690 32.677 1.91e-30 127
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0264 K06027 - vvi:100243494 1431.77