Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi19g0264 | ATGGCCGGGAGATCAGGCCACGATTCCTCCATGATCGTCACCAACACCCCAGCTAGAGATCTCGTCCACACCAATTTCGCCTACTGCTCCCCCTCCGATCTCCGCAAGTTCGCCGTTCATGGATCCAATCTCGCTCTCGCATCGGTTGGGGATTCATGCGTTCTTTCTATTTCTGCCCATGAGAGCATTCCTAATGGTCATATTGCTCTTAATGCTATCCAACGTCGCCATGCGAGAGTTTCTACGGGGGACTCAGTATCTGTGAGCAGATTTATCCCACCTGATGACTTCAACCTAGCATTGCTCACTCTGGAGTTGGAGTTTGTGAAAAAAGGGACTAAAGATGAACAGATTGATGCTGTTCAGTTGTCTCAGCAACTTAGGAAGAGATTTATTAACCAGGTTATGACAACAGGACAGAGGGTAACATTTGAGTATCATGGCAATGGTTATATTTTCACAGTTAATCAGGCGGTCATAGAAGGGCAAGAAAAATCAAAAGGTATTGAAAGAGGGATAATTGCAGCTGAAACGTATATTATTTTTGAAGCACCAAATTCCAGTGGAATAAAGATTGTGAACCAGCGGGAGGCTGCTAGTAGCAACATCTTTAGGCAGAAAGAGTTTAATCTCCAGTCACTCGGTATAGGTGGTCTAAGTGCAGAGTTTGCGGATATATTTCGAAGAGCTTTTGCCTCTAGAGTTTTTCCTTCCCATGTGACCAGCAGACTAGGCATCAAGCATGTCAAGGGAATGCTGCTTTATGGACCTCCTGGTACTGGGAAGACACTAATGGCTCGCCAGATTGGAAAGATGTTAAATGGCAGGGAACCAAAGATTGTGAATGGGCCTGAAGTGCTAAGTAAGTTTGTTGGTGAAACTGAGAAGAATGTTAGAGATTTATTTGCTGATGCCGAGAATGACCAAAGAACTCGCGGTGATCAAAGTGACTTGCATGTTATCATTTTTGATGAAATTGATGCAATTTGTAAGTCAAGAGGTTCCACTAGAGATGGTACTGGGGTTCATGATAGCATTGTTAACCAGCTCCTTACAAAGATAGATGGTGTCGAGTCTTTGAATAACGTTTTGCTCATCGGAATGACTAACAGAAAGGATTTGCTGGATGAAGCACTTCTGAGGCCTGGACGTTTGGAGGTTCAAGTGGAGATAAGCCTCCCTGATGAGAATGGTCGTTTACAAATTCTTCAAATTCATACAAACAAAATGAAAGAAAATTCTTTTCTCGCTCCAGATGTGAACTTGCAAGAGCTTGCTGCTCGGACAAAGAACTATAGTGGGGCAGAGCTTGAAGGCGTTGTAAAAAGTGCAGTATCATTTGCTTTGAATCGGCAACTAAGCATGGATGATCTTACTAAGCCAGTGGATGAGGAGAGTATAAAAGTCACCATGGAGGATTTTCTGAATGCCCTCCAAGAGATTATTCCTGCATTTGGAGCCTCCACAGATGACCTTGAACGGTGCAGAGTTAATGGCATGGCTGAATGTGGGTCACGACATGAGCACATATATCAAAGAGCCATGCTGTTGGTGGAGCAAGTAAAAGTGAGCAAAGGAAGCCCACTTATTACCTGTCTTCTGGAAGGCCCAAGTGGCAGTGGTAAGACTTCACTGGCAGCTACTGTTGGTATTGACAGTGATTTCCCCTATGTCAAGATTATTTCTGCAGAATCAATGATTGGCCTTAGCGAAAGCAGTAAATGTGCAAGGATTGTCAAGGTATTTGAGGATGCTTATAAGTCACAATTAAGCATTATTGTTCTTGATGACATTGAAAGGTTAATAGAGTATGTTGCAATCGGTCCTCGTTTTTCAAATATAATTTCTCAAACACTGTTGGTCCTCATCAAGCGGCTTCCTCCAAAGGGCAAAAACGTGTTAGTGATCGGGACAACAAGCGAAGTGTCTTTCTTAGATTCAGTTGGCATTCGTGATGCTTTCTCTGTCACATACCATGTTCCAACATTAAAGACAGAAGATGCTAAAAAGGTGTTACAACAGCTAAATGTTTTCTCAGATGATGACATCGATTCTGCTGCAGAGGCCCTGAATGATATGCCAATCAAGAAACTGTACATGTTAATTGAAATGGCCGCCCAGGGAGAACATGGTGGGGAGGCTGAGGCCATTTATTCAGGCAAAGAAAAAATCGCAATCTCTCATTTCTTTGATTGCCTTCAAGACATGATCCGATATTAG | 2220 | 0.4306 | MAGRSGHDSSMIVTNTPARDLVHTNFAYCSPSDLRKFAVHGSNLALASVGDSCVLSISAHESIPNGHIALNAIQRRHARVSTGDSVSVSRFIPPDDFNLALLTLELEFVKKGTKDEQIDAVQLSQQLRKRFINQVMTTGQRVTFEYHGNGYIFTVNQAVIEGQEKSKGIERGIIAAETYIIFEAPNSSGIKIVNQREAASSNIFRQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPSHVTSRLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGREPKIVNGPEVLSKFVGETEKNVRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSMDDLTKPVDEESIKVTMEDFLNALQEIIPAFGASTDDLERCRVNGMAECGSRHEHIYQRAMLLVEQVKVSKGSPLITCLLEGPSGSGKTSLAATVGIDSDFPYVKIISAESMIGLSESSKCARIVKVFEDAYKSQLSIIVLDDIERLIEYVAIGPRFSNIISQTLLVLIKRLPPKGKNVLVIGTTSEVSFLDSVGIRDAFSVTYHVPTLKTEDAKKVLQQLNVFSDDDIDSAAEALNDMPIKKLYMLIEMAAQGEHGGEAEAIYSGKEKIAISHFFDCLQDMIRY* | 740 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi19g0264 | 739 | Gene3D | - | 8 | 91 | - | - | |
Vvi19g0264 | 739 | FunFam | Vesicular-fusion ATPase SEC18 | 204 | 394 | - | - | |
Vvi19g0264 | 739 | Gene3D | - | 490 | 661 | IPR027417 | - | |
Vvi19g0264 | 739 | FunFam | Vesicle-fusing ATPase | 95 | 192 | - | - | |
Vvi19g0264 | 739 | Gene3D | - | 95 | 192 | - | - | |
Vvi19g0264 | 739 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 227 | 491 | IPR027417 | - | |
Vvi19g0264 | 739 | Gene3D | - | 394 | 481 | - | - | |
Vvi19g0264 | 739 | FunFam | Vesicle-fusing ATPase | 394 | 481 | - | - | |
Vvi19g0264 | 739 | Gene3D | - | 203 | 393 | IPR027417 | - | |
Vvi19g0264 | 739 | SMART | CDC48_N_2 | 10 | 93 | IPR003338 | - | |
Vvi19g0264 | 739 | SUPERFAMILY | ADC-like | 10 | 91 | IPR009010 | - | |
Vvi19g0264 | 739 | Pfam | Cell division protein 48 (CDC48), domain 2 | 117 | 160 | IPR004201 | - | |
Vvi19g0264 | 739 | Pfam | AAA+ lid domain | 419 | 474 | IPR041569 | - | |
Vvi19g0264 | 739 | SMART | AAA_5 | 528 | 664 | IPR003593 | GO:0016887 | |
Vvi19g0264 | 739 | SMART | AAA_5 | 248 | 395 | IPR003593 | GO:0016887 | |
Vvi19g0264 | 739 | Pfam | ATPase family associated with various cellular activities (AAA) | 533 | 660 | IPR003959 | GO:0005524|GO:0016887 | |
Vvi19g0264 | 739 | Pfam | ATPase family associated with various cellular activities (AAA) | 252 | 392 | IPR003959 | GO:0005524|GO:0016887 | |
Vvi19g0264 | 739 | CDD | RecA-like_NSF-SEC18_r1-like | 215 | 391 | - | - | |
Vvi19g0264 | 739 | FunFam | vesicle-fusing ATPase isoform X1 | 490 | 661 | - | - | |
Vvi19g0264 | 739 | FunFam | Vesicle-fusing ATPase protein | 8 | 91 | - | - | |
Vvi19g0264 | 739 | SUPERFAMILY | Cdc48 domain 2-like | 94 | 197 | IPR029067 | - | |
Vvi19g0264 | 739 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 519 | 703 | IPR027417 | - | |
Vvi19g0264 | 739 | ProSitePatterns | AAA-protein family signature. | 363 | 381 | IPR003960 | GO:0005524|GO:0016887 | |
Vvi19g0264 | 739 | PANTHER | VESICULAR-FUSION PROTEIN NSF | 10 | 738 | IPR039812 | GO:0016887|GO:0035494 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi19g0264 | Vvi-Chr19 | 2793644 | 2811295 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi19g0264 | 216 | 467 | Calmodulin-binding Proteins | AT3G56690 | 32.677 | 1.91e-30 | 127 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi19g0264 | K06027 | - | vvi:100243494 | 1431.77 |