LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g0259	ATGGCTTCCTTGAAAAACGTTGGAGCTCTAACTCTCCTTCTTCTCCTCCTACTTTCATTGACAGTGCAAACTTCCGGCAAGGAAGATGCCAGCGGAGCGGGATCGAAATGTGGTGATCCCAAAGGAGGATCCGAGGAAAAGGCATCAGCCTTAAAGCTGAAGGTGATAGCAATATTCTCGATACTGATTGCTAGCATCTTGGGCATCTCTTTTCCCATACTTCTACAAGGCATGCCACTGCTTAAACCGGATGGAAAATTGTTCGTTTTGATTAAGGCATTCGCGTCGGGGGTTATCCTGGCCACAGGCTACGTTCACGTGCTGCCGGATTCAATTGAGAGCTTGACTTCTCCATGTCTGCCGCAGGCTCCATGGAGCAAATTCCCATTTTCAACGTTCATAGCCATGGTTGCAGCGGTTTTAACACTGATGATGGATTCTTTTGCAATGAGTTATTACAAGAAACATGGAATGAGTGGAGCAGAATGCGAATATGGGGATCACATAGAGAATGATCAGGGACATTCTCATGGACACGGACATGGAGTTGGTGTGAAGAAGCTTGATGACGAATCCTCAAAACTATTGAGATATCAAATTATCGCTCAGGTGCTAGAACTGGGAATTGTGGTCCACTCAGTGGTGATTGGGCTGTCAATGGGGGCCTCTGAAAATGCCAGTACAATCAGGCCCCTCATTGCTGCTCTTTGTTTCCATCAATTCTTTGAAGGAATGGGGCTTGGAGGATGCATTCTACAGGCTGAATACAAGGCAAGGACGAAGGCCATCATGGTGTTTTTCTTCTCGGTCACCACCCCCTTGGGGATCGCGCTGGGAATCGGCTTATCAAAGGTGTACAGCGACGACAGCCCGACGGCTCTGATAGTGGTTGGAGTGCTGAACGCTACATCTGCTGGGCTACTGAATTACATGGCGCTGGTGGACCTGCTGGGCGCTGATTTCATGGGCCCCAAATTGCAATCAAACATGAAGCTTCAAATGTGGGCTTATGTCGCTGTCATATTGGGCGTTGGTGGCATGTCCGTGATGGCAATATGGGCGTGA	1065	0.4854	MASLKNVGALTLLLLLLLSLTVQTSGKEDASGAGSKCGDPKGGSEEKASALKLKVIAIFSILIASILGISFPILLQGMPLLKPDGKLFVLIKAFASGVILATGYVHVLPDSIESLTSPCLPQAPWSKFPFSTFIAMVAAVLTLMMDSFAMSYYKKHGMSGAECEYGDHIENDQGHSHGHGHGVGVKKLDDESSKLLRYQIIAQVLELGIVVHSVVIGLSMGASENASTIRPLIAALCFHQFFEGMGLGGCILQAEYKARTKAIMVFFFSVTTPLGIALGIGLSKVYSDDSPTALIVVGVLNATSAGLLNYMALVDLLGADFMGPKLQSNMKLQMWAYVAVILGVGGMSVMAIWA*	355

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g0259	354	PANTHER	ZINC/IRON TRANSPORTER	50	351	-	-
	Vvi19g0259	354	Pfam	ZIP Zinc transporter	52	351	IPR003689	GO:0016020\|GO:0030001\|GO:0046873\|GO:0055085
	Vvi19g0259	354	NCBIfam	ZIP zinc/iron transport family	43	354	IPR004698	GO:0005385\|GO:0016020\|GO:0071577

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g0259	Vvi-Chr19	2760878	2762169	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi19g0259	12	354	Inorganic Solute Cotransporters	AT4G19690	53.644	2.52e-121	352

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi19g0259	K14709		-	vvi:100241788	659.833

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