Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0256 ATGATGGGTTGCATTTGTTGTAAGCCTTCTGCCATTGAGGATAGTAGGGAGAGTCCAAGAGAGCGGTTGTCGAGTAAGGCATCATCAAACCTGCGGGTGGCGGGGCCAGCCTCCTCCCGGAGAGAGGAAGCTTATCGTGTAAAAGATAGGTTTGATAGTAATGATGGGAGGACAATGCTGATTGAAAAGCAAGCTAATGGTTCAGTTCGGTTGCATGGTGAGAACGTTGAGAGGAAGAGGGAGAGGGGTGAATATGTTGTTGCCCAACATCCGGGATTGGGGAGTATCCCGAAAGCAATGGAAGGAGAACAGGTTGCTGCCGGTTGGCCTGCTTGGTTATCTGCAGTGGCTGGAGAAGCTATAAGGGGATGGTTACCAAGGCGGGCCGATTCTTTTGAGAAACTAGATAAAATTGGCCAGGGAACTTACAGTAATGTTTACAGGGCTCGTGATCTGGACCAACGGAAAATTGTTGCTTTGAAGAAAGTTAGGTTTGATAACCTGGAGCCAGAGAGTGTCCGCTTTATGGCAAGGGAAATTCACGTTCTGCGCAGGCTTGATCATCCAAATATAATAAAACTGGAAGGTCTAGTCACATCAAGGATGTCTTGCAGCTTGTATCTTGTTTTTGAGTACATGGAACATGATCTAGCAGGTCTCGCCTCACACCCTGGTCTCAAGTTTACAGAACCACAGGTTAAATGTTATATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGCCGTGGTGTTTTGCATCGTGATATAAAGGGTTCCAACCTTCTAATTGACAACAGTGGCATCTTGAAGATAGCAGACTTTGGTTTGGCAAGTTTTTTTGATCCCCATCAAATCCAGCCACTGACAAGCCGTGTGGTAACACTTTGGTACCGGCCACCTGAGCTCTTACTTGGAGCCACTTACTATGGGACTGCTGTGGATTTATGGAGCACTGGTTGTATACTGGCTGAACTATATGCTGGCAAGCCTATAATGCCAGGAAGAACAGAGGTGGAACAGTTGCATAAAATTTTCAAGCTTTGTGGCTCTCCATCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACCATATTTAAGCCCCAACAGCCTTATAGGCGCTGTGTTGCAGAAACATTTAAAGACTTTCCTACACCTGCATTAGGGCTTATGGAAACACTTCTTTCCATAGATCCTGCTGATCGTGGATCTGCAGCCTCTGCTCTTAAAAGTGAGTTCTTTACAGTAAAGCCACTTCCTTGTGATCCTTCAAGCTTGCCTAAGTATCCTCCCAGCAAAGAGTTTGATGCAAAAGTACGAGATGAAGAAGCTAGAAGACAAGGAGCAACAGGAAAGGGCCAGAGACTTGACCATGAAAGGAAAGGAATAAGAGAGTCTCGAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCTCATCCAGAAGAAGTTGCTTCTGGTTTTCCAATAGACCCTCCTAGGCCGTCTCAAGCTATAGAAGATGGAAGCATAGATACCCAAGGCCCTCTTCATAAGAGAGCCTCCCATTCAGGCCCACTGGCTCACCGGGCTGTGTGGGCAAAGGCTGGGAAAAACCTGGATGATGCTCCAAAGGTTTCGACTGGAGCCGACTTGTCAACCATGTCGAGTTTAGTAGCAGCCAGGAGGAGCTTGTTGTCTGAAGATCGCAGAGAAAAGTCTGGTTCATCACAACCAGATGTCTCAAAACTAATAGTCAGGTTTCCAGGATCCTTCAAGGAGGCCTCAGAATCCACAATACAGCAGGATCAGAAGCATCAAATGCAGGGTGCCGGCAGATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTTGTTCCCTCAGGCAAGGTGGATCAGATGCTAAAGGACCATGACCGCCAGATACAAGATGCTGAAAGACGAGCACGTCTAGACAGGGAAAAACTCAGAAAAGTTCAGGTTGAAGGGAACAAAATATCAGCCAATTCTTTATTTGTTTCTGGTCGTTGA 2142 0.4641 MMGCICCKPSAIEDSRESPRERLSSKASSNLRVAGPASSRREEAYRVKDRFDSNDGRTMLIEKQANGSVRLHGENVERKRERGEYVVAQHPGLGSIPKAMEGEQVAAGWPAWLSAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQRKIVALKKVRFDNLEPESVRFMAREIHVLRRLDHPNIIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEPQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNSGILKIADFGLASFFDPHQIQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPTPALGLMETLLSIDPADRGSAASALKSEFFTVKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGATGKGQRLDHERKGIRESRAVPAPDANAELVLSMQKRQGQSNSKSRSEKFNPHPEEVASGFPIDPPRPSQAIEDGSIDTQGPLHKRASHSGPLAHRAVWAKAGKNLDDAPKVSTGADLSTMSSLVAARRSLLSEDRREKSGSSQPDVSKLIVRFPGSFKEASESTIQQDQKHQMQGAGRCTQKEDGRMTSKDPVLLGYGSKGHKIHYSGPLLVPSGKVDQMLKDHDRQIQDAERRARLDREKLRKVQVEGNKISANSLFVSGR* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0256 713 MobiDBLite consensus disorder prediction 14 43 - -
Vvi19g0256 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Vvi19g0256 713 CDD STKc_CDK9_like 132 416 - -
Vvi19g0256 713 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0256 713 MobiDBLite consensus disorder prediction 612 627 - -
Vvi19g0256 713 Pfam Protein kinase domain 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0256 713 MobiDBLite consensus disorder prediction 426 540 - -
Vvi19g0256 713 SUPERFAMILY Protein kinase-like (PK-like) 126 422 IPR011009 -
Vvi19g0256 713 MobiDBLite consensus disorder prediction 483 497 - -
Vvi19g0256 713 Coils Coil 672 699 - -
Vvi19g0256 713 Gene3D Phosphorylase Kinase; domain 1 119 214 - -
Vvi19g0256 713 PANTHER CELL DIVISION PROTEIN KINASE 130 422 - -
Vvi19g0256 713 Gene3D Transferase(Phosphotransferase) domain 1 215 455 - -
Vvi19g0256 713 MobiDBLite consensus disorder prediction 435 469 - -
Vvi19g0256 713 FunFam probable serine/threonine-protein kinase At1g54610 215 456 - -
Vvi19g0256 713 MobiDBLite consensus disorder prediction 612 641 - -
Vvi19g0256 713 FunFam probable serine/threonine-protein kinase At1g54610 119 214 - -
Vvi19g0256 713 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Vvi19g0256 713 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0256 Vvi-Chr19 2734862 2743736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0256 124 460 Core Cell Cycle Gene Families AT5G10270 53.258 1.19e-120 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vvi19g0256 Pkinase 5.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0256 - - vvi:100250348 1432.16