Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0255 ATGTGTGTGCTCTGGATTGCATTCAGCTATAGGTGGATGACAATGGAGGGTTCTTCTGAGTCGGGTTGGCGTAATTCTGATATTTCTAGGGGATTGAATGTTTCTATAGTTTCGCACGGGAGAAATCCCAGGCAGCGTCATGCCAATAGAATTGGCTTGTCTGGAGGTGCATCACATGATTCTGGATTTATATCTGGGAGGAAGGAGAGAGATCATGTTCTGTCGTCTCATACTAAGAACCATAAAAACCAGGTCGGTATTTCTCAAGTTTGTGATGATGATGTAGCTTTGGACCCTTTTGTTCGGGCAATAGAATGGGGTGATGTTAGCTTGAGGCATTGGTTGGACAAACCAGAACGAAGAGTTGATGCGCTTGAATGTTTGCACATATTTACTCAAATTGCAGAAATTGTTAATGCAGCACATTCACAAGGAGTAGTTGTTAATAATGTGAGGCCTTCCTGTTTTGTCATGTCATCTTTCAACCATGTTTCCTTTATTGAGTCAGTATCCTGCTCAGATTCAGGTTCTGATTCTTTGGAGGATGGGTCGAACAGCCATACCGAGGAGGATAATGGATTATCTTCTTTGCCTGATGACTTGCATCTGCGGAAAAGCCGGTCAGGAAATGAAGATTTTTTACCCACGATAATGCCAACAAATGCTTCTCAGATTGTATTATCAGAAACCAGTTGCATGCAATCAAGTTCAGTTTCTGCAACACATGTGACATTAGTAGAAGATAGAGAAGAATATAAAAGTACAGATAGAAGAAGTGTTGAACAATCAGAAGAAAAGAAGCAAACCTTTCCGATGAAGGAGATATTGCTCATGGAAACCAATTGGTACACGAGTCCGGAAGAGATTTCTGGTGCTCAGACTTCCTGTGCTTCTGATATTTACCAATTGGGCGTCCTCCTTTTTGAGTTATTCTGCACATTTAGCTCAAGAGAAGAAAAGAGCAGAACTATGTCTTGTTTGAGGCATCGAGTTCTTCCTCCTCAGTTGTTGTTGAAGTGGCCAAAGGAAGCTTCATTTTGCCTATGGTTGCTGCACCCTGAGCCAAGTAGTCGGCCAAAGATAAGTGAATTGTTTCAAAGCGAGTTTCTTACCGAACCAAGGGACAAAATGGAAGAACGTGAAGCAGCAATAGAGCTTAGAGAGAGAATAGAGGAGCAGGAATTGTTGCTGGAATTTCTTTTGTTGATGCAACAAAGAAAACAGGGAGCTGTGGATAAGTTGCAAGATACCATTTCTTTTCTATCTTCTGATATTGAAGAAGTCGGAAAACAGCAAGCTACTCTTAGGAAAAGGGGAGGCTCATACCAAGAACTGGTCAAGGATGATCAATCAACATCTGATCTTTCTCCAATGGATGTTGATGAAAATGAGGATTCCACTAGTGTCAGGTCTAGCAAAAGATTCAGACAAGGAGTTCATCACATAAAGGAATTGGATGATACTTTAAACAATGGCCAAAAGTTGGGCATGAATGCTGAAAATCCAGAAATTCTCATTTCCAAAAGTTCTCGATTAATGAAGAACTTTAAGAAACTAGAGTCAGCTTATCTTTTGACAAGACGCAAGCCAACAAAGCCATCAGGGAAACCATCCAATAAAATCTCCCCCCCGAGTAGTAATGGTAGAGGATCTATTGTTGTAACTGAAAGAAGTTCAGTTAATAATTTGGCATCAAAAGACCAGTACAATGAGCACGGACAAAGTGGATGGATAAATCCATTTCTTGATGGTTTGTGCAAGTATCTATCTTTCAGTAAGTTAAAAGTTAAAGCAGACTTGAAGCAAGGGGATCTATTAAATTCTTCCAACCTAGTATGCTCTGTCAGTTTTGATCGGGATGGAGAACTTTTTGCTACAGCTGGTGTAAATAAGAAGATTAAAGTATTTGAATGTAATTCAATCCTAAATGAAGATCGTGATATCCACTATCCTTTAGTTGAAATGGCTTGTAGGTCAAAGCTAAGCAGTATATGTTGGAATAGTTATATCAAAAGCCAGATTGCTTCCAGTAACTTTGAAGGTGTAGTACAGGTATGGGATGTTACAAGAAGTCAAGTACTTACAGAAATGAGAGAGCATGAGAGGCGTGTATGGTCCATCGACTACTCATTAGCAGATCCAACAATGTTGGCTAGCGGCAGTGATGATGGTTCAGTTAAGCTATGGAGTATCAATCAGGGAGTAAGTGTTGGTACCATCAAAACGAAGGCCAATGTATGCTGTGTTCAGTTTACCCCAGACTCTGGCCGTTACCTTGCTTTTGGTTCAGCTGATCATAGAATTTATTACTATGATCTCCGTAACTCAAAAATACCTCTGTGCACATTACTTGGGCACAATAAGACTGTGAGTTACGTCAAGTTTGTAGATTCAACGCATCTTGTTTCTGCATCCACGGATAACACTCTGAAGCTCTGGGATTTGTCAATGTGCACGGCTCGGGTTCTTGAAGGTCCACTTCAATCATTCACTGGCCACCAGAATGTAAAGAACTTTGTAGGTTTGTCTGTATCCGATGGTTACATTGCTACGGGCTCAGAAGCAAATGAGGTTGTCATCTACCACAAGGCCTTCCCCATGCCAGCACTGACATTCAAATTCAACAGCATGGACTCTGACCATGAATCAGATGATTCTGCACAGTTCATCTCTTCTGTATGTTGGCGCGGCCAATCATCCACCTTAGTTGCTGCAAACTCTGCTGGAAACATCAAGATTTTGGAGATGGTTTAG 2754 0.4103 MCVLWIAFSYRWMTMEGSSESGWRNSDISRGLNVSIVSHGRNPRQRHANRIGLSGGASHDSGFISGRKERDHVLSSHTKNHKNQVGISQVCDDDVALDPFVRAIEWGDVSLRHWLDKPERRVDALECLHIFTQIAEIVNAAHSQGVVVNNVRPSCFVMSSFNHVSFIESVSCSDSGSDSLEDGSNSHTEEDNGLSSLPDDLHLRKSRSGNEDFLPTIMPTNASQIVLSETSCMQSSSVSATHVTLVEDREEYKSTDRRSVEQSEEKKQTFPMKEILLMETNWYTSPEEISGAQTSCASDIYQLGVLLFELFCTFSSREEKSRTMSCLRHRVLPPQLLLKWPKEASFCLWLLHPEPSSRPKISELFQSEFLTEPRDKMEEREAAIELRERIEEQELLLEFLLLMQQRKQGAVDKLQDTISFLSSDIEEVGKQQATLRKRGGSYQELVKDDQSTSDLSPMDVDENEDSTSVRSSKRFRQGVHHIKELDDTLNNGQKLGMNAENPEILISKSSRLMKNFKKLESAYLLTRRKPTKPSGKPSNKISPPSSNGRGSIVVTERSSVNNLASKDQYNEHGQSGWINPFLDGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSVSFDRDGELFATAGVNKKIKVFECNSILNEDRDIHYPLVEMACRSKLSSICWNSYIKSQIASSNFEGVVQVWDVTRSQVLTEMREHERRVWSIDYSLADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFTPDSGRYLAFGSADHRIYYYDLRNSKIPLCTLLGHNKTVSYVKFVDSTHLVSASTDNTLKLWDLSMCTARVLEGPLQSFTGHQNVKNFVGLSVSDGYIATGSEANEVVIYHKAFPMPALTFKFNSMDSDHESDDSAQFISSVCWRGQSSTLVAANSAGNIKILEMV* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0255 917 MobiDBLite consensus disorder prediction 526 551 - -
Vvi19g0255 917 ProSiteProfiles Protein kinase domain profile. 8 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0255 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 783 816 - -
Vvi19g0255 917 Pfam WD domain, G-beta repeat 693 730 IPR001680 GO:0005515
Vvi19g0255 917 Pfam WD domain, G-beta repeat 779 814 IPR001680 GO:0005515
Vvi19g0255 917 Gene3D - 583 917 IPR015943 GO:0005515
Vvi19g0255 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 697 734 - -
Vvi19g0255 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 697 739 IPR001680 GO:0005515
Vvi19g0255 917 ProSitePatterns Trp-Asp (WD) repeats signature. 801 815 IPR019775 -
Vvi19g0255 917 Gene3D Transferase(Phosphotransferase) domain 1 108 382 - -
Vvi19g0255 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 783 816 IPR001680 GO:0005515
Vvi19g0255 917 SUPERFAMILY Protein kinase-like (PK-like) 77 368 IPR011009 -
Vvi19g0255 917 MobiDBLite consensus disorder prediction 535 551 - -
Vvi19g0255 917 SMART WD40_4 876 915 IPR001680 GO:0005515
Vvi19g0255 917 SMART WD40_4 823 862 IPR001680 GO:0005515
Vvi19g0255 917 SMART WD40_4 733 772 IPR001680 GO:0005515
Vvi19g0255 917 SMART WD40_4 690 730 IPR001680 GO:0005515
Vvi19g0255 917 SMART WD40_4 602 637 IPR001680 GO:0005515
Vvi19g0255 917 SMART WD40_4 651 687 IPR001680 GO:0005515
Vvi19g0255 917 SMART WD40_4 776 814 IPR001680 GO:0005515
Vvi19g0255 917 Coils Coil 904 917 - -
Vvi19g0255 917 SMART serkin_6 23 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0255 917 MobiDBLite consensus disorder prediction 177 201 - -
Vvi19g0255 917 MobiDBLite consensus disorder prediction 183 201 - -
Vvi19g0255 917 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 580 917 - -
Vvi19g0255 917 MobiDBLite consensus disorder prediction 436 474 - -
Vvi19g0255 917 PRINTS G protein beta WD-40 repeat signature 801 815 IPR020472 -
Vvi19g0255 917 PRINTS G protein beta WD-40 repeat signature 674 688 IPR020472 -
Vvi19g0255 917 PRINTS G protein beta WD-40 repeat signature 717 731 IPR020472 -
Vvi19g0255 917 SUPERFAMILY WD40 repeat-like 608 913 IPR036322 GO:0005515
Vvi19g0255 917 Coils Coil 376 396 - -
Vvi19g0255 917 PANTHER PROTEIN SPA1-RELATED 2 68 917 IPR044630 GO:0009640
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0255 Vvi-Chr19 2720962 2731396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0255 683 861 Miscellaneous Gene Families AT5G08390 27.624 1.18e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Vvi19g0255 WD40 0.0012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0255 - - vvi:100258898 1762.27