Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0251 ATGGGCATCAGAGTCCAGACTGGGTTCTTTTTTCTTCATGTTCTGGTTCTCTTCTTTTTGTCTTTCTACATGCATCTCTCCATTGGGGTAGATACCATCTTTCCAGGCCAACCTATCTCTGGAAACCAGACAATAACTTCACAGGATGAAAGATTTGAACTGGGTTTCTTCAAACCAAACAACTCCCAGAACTATTACATAGGGATCTGGTACAAAAAAGTCCCAGTTCATACAGTTGTTTGGGTGGCAAACAGATATAAACCCCTTGCTGATCCTTTTTCGTCAAAACTAGAACTCTCCGTTAATGGAAACCTTGTCGTCCAAAACCAGTCCAAAATCCAAGTGTGGTCAACTAGCATCATCTCAAGCACCCTGAATTCTACCTTCGCACTTACCAAGAAGCAGCAAATCTACTCTTCATGGAGCAGTTATGATGATCCTGCACCAGGGCCCTTCTTGCTCAAGCTAGACCCGAATGGAACGAGGCAATACTTTATCATGTGGAACGGAGACAAGCACTGGACTTGTGGGATCTGGCCAGGGCGTGTTTCGGTCTTCGGTCCTGATATGTTAGATGACAACTACAACAACATGACCTATGTGTCGAATGAGGAAGAGAACTATTTCACCTACTCAGTGACCAAAACCTCCATTCTATCAAGATTTGTGATGGATTCATCTGGGCAGCTCAGGCAGCTCACATGGTTGGAGGACTCCCAACAGTGGAAGTTGATCTGGTCTCGACCCCAGCAGCAATGCGAGATCTATGCCTTATGTGGGGAATATGGTGGCTGCAATCAGTTCAGTGTTCCCACATGTAAATGCCTGCAAGGATTTGAACCAAGGTTTCCCACAGAATGGATCTCTGGAAATCACTCCCATGGATGTGTGAGGACAACCCCATTGCAGTGCAGGAAAGGAGGAAAAGATGGCTTCCGGATGATTCCAAACATAAGATTACCAGCAAATGCTGTATCTTTAACAGTAAGGAGCTCTAAAGAATGTGAGGCTGCTTGCTTAGAGAACTGTACTTGTACTGCATATACTTTTGATGGTGAGTGTTCAATATGGCTAGAAAATTTGTTGAATATTCAGTATCTTTCGTTCGGTGATAATCTGGGAAAAGATCTACATCTACGAGTGGCAGCGGTGGAGCTGGTAGTTTACAGAAGCCGGACAAAGCCAAGGATCAATGGGGACATTGTGGGTGCTGCTGCAGGGGTTGCTACCCTAACCGTTATCCTAGGGTTCATCATTTGGAAGTGCAGGAGAAGGCAGTTTTCTAGTGCAGTGAAGCCAACAGAGGACTTATTGGTCCTCTATAAGTACAGTGATCTAAGGAAAGCAACAAAGAACTTTTCTGAGAAGTTGGGTGAAGGAGGCTTTGGTTCAGTGTTCAAAGGGACTCTGCCCAATTCGGCTGAAATAGCTGCGAAGAAACTCAAATGCCATGGACAGGGAGAGAAGCAGTTCAGAGCAGAAGTCAGCACCATTGGGACAATCCATCACATAAATCTCATTCGCCTTCGAGGGTTTTGTCTTGAAGGTACAAAAAGGTTTCTGGTCTATGAATACATGCCCAATGGCTCTCTAGAAAGCCATTTGTTTCAGAAGAGCCCTAGGATCTTAGACTGGAAAACAAGGTGCCAGATTGCACTTGGGATCGCTCGAGGCTTAGAGTATCTCCACGAAAAGTGCAGAGACTGCATCATACATTGTGATATCAAGCCAGAAAACATACTACTGGATGCTGGGTATAATCCTAAGATTTCAGACTTTGGCTTAGCAAAGCTCTTAGGCCGGGACTTCAGCCGGGTTCTAACAACCGTAAAAGGAACCAGAGGATACCTTGCACCAGAATGGATTTCAGGCATAGCTATCACTGCAAAAGCTGATGTCTTCAGCTATGGGATGATGCTTTTTGAGATTATATCAGGAAGGAGGAACTGGGAGATAAAGGATGACAGGATGAATGATTATTTTCCAGCACAAGTCATGAAGAAATTAAGCAGAGGTGAGGAACTTCTAACCTTGCTAGATGAGAAGTTGGAGCAGAATGCAGACATAGAAGAGCTCACCAGAGTCTGCAAAGTAGCTTGTTGGTGCATTCAGGATGATGAAGGTGACAGACCCTCCATGAAATCTGTTGTTCAAATACTCGAGGGAGCGCTGAACGTAATCATGCCACCAATCCCATCATTTATCGAAAACATTGCAGAAAATCCAGAGGAAGGCAGCCCCACCCCTGGGTTCTGA 2256 0.449 MGIRVQTGFFFLHVLVLFFLSFYMHLSIGVDTIFPGQPISGNQTITSQDERFELGFFKPNNSQNYYIGIWYKKVPVHTVVWVANRYKPLADPFSSKLELSVNGNLVVQNQSKIQVWSTSIISSTLNSTFALTKKQQIYSSWSSYDDPAPGPFLLKLDPNGTRQYFIMWNGDKHWTCGIWPGRVSVFGPDMLDDNYNNMTYVSNEEENYFTYSVTKTSILSRFVMDSSGQLRQLTWLEDSQQWKLIWSRPQQQCEIYALCGEYGGCNQFSVPTCKCLQGFEPRFPTEWISGNHSHGCVRTTPLQCRKGGKDGFRMIPNIRLPANAVSLTVRSSKECEAACLENCTCTAYTFDGECSIWLENLLNIQYLSFGDNLGKDLHLRVAAVELVVYRSRTKPRINGDIVGAAAGVATLTVILGFIIWKCRRRQFSSAVKPTEDLLVLYKYSDLRKATKNFSEKLGEGGFGSVFKGTLPNSAEIAAKKLKCHGQGEKQFRAEVSTIGTIHHINLIRLRGFCLEGTKRFLVYEYMPNGSLESHLFQKSPRILDWKTRCQIALGIARGLEYLHEKCRDCIIHCDIKPENILLDAGYNPKISDFGLAKLLGRDFSRVLTTVKGTRGYLAPEWISGIAITAKADVFSYGMMLFEIISGRRNWEIKDDRMNDYFPAQVMKKLSRGEELLTLLDEKLEQNADIEELTRVCKVACWCIQDDEGDRPSMKSVVQILEGALNVIMPPIPSFIENIAENPEEGSPTPGF* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0251 751 Pfam S-locus glycoprotein domain 174 282 IPR000858 GO:0048544
Vvi19g0251 751 Pfam PAN-like domain 304 364 IPR003609 -
Vvi19g0251 751 SMART serkin_6 451 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0251 751 CDD B_lectin 37 147 IPR001480 -
Vvi19g0251 751 ProSiteProfiles PAN/Apple domain profile. 304 382 IPR003609 -
Vvi19g0251 751 FunFam Serine/threonine-protein kinase 526 728 - -
Vvi19g0251 751 CDD STKc_IRAK 457 722 - -
Vvi19g0251 751 CDD PAN_AP_plant 300 382 - -
Vvi19g0251 751 SMART blect_4 36 147 IPR001480 -
Vvi19g0251 751 SUPERFAMILY Protein kinase-like (PK-like) 435 721 IPR011009 -
Vvi19g0251 751 SMART ntp_6 307 381 IPR003609 -
Vvi19g0251 751 FunFam Receptor-like protein kinase 4 419 525 - -
Vvi19g0251 751 Pfam Protein kinase domain 454 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0251 751 Gene3D Phosphorylase Kinase; domain 1 417 525 - -
Vvi19g0251 751 SUPERFAMILY Hairpin loop containing domain-like 310 365 - -
Vvi19g0251 751 Gene3D Transferase(Phosphotransferase) domain 1 526 727 - -
Vvi19g0251 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
Vvi19g0251 751 PIRSF SRK 4 136 IPR024171 GO:0004674
Vvi19g0251 751 PIRSF SRK 122 749 IPR024171 GO:0004674
Vvi19g0251 751 Gene3D - 26 177 IPR036426 -
Vvi19g0251 751 Pfam D-mannose binding lectin 78 128 IPR001480 -
Vvi19g0251 751 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 179 IPR036426 -
Vvi19g0251 751 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Vvi19g0251 751 ProSiteProfiles Protein kinase domain profile. 451 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0251 751 PANTHER OS07G0415500 PROTEIN 10 732 - -
Vvi19g0251 751 ProSitePatterns Protein kinases ATP-binding region signature. 457 480 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0251 Vvi-Chr19 2699751 2702129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0251 441 730 Receptor kinase-like Gene Family AT5G20050 41.234 7.09e-73 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi19g0251 Pkinase 5.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0251 - - vvi:100253752 1503.8