Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0242 ATGCCTCTAGAAAGATCAGAAGTAATCAGAGTTGTAATTGTACGTACCTATAAAGAACTCAAATGTGATAACGGTATGATAATACGATATGATGACAATGCTGCAGTTATTATTGATCAAGAAGGAAACTCAAAAGGAACTCGAATTTTTGGTGCGATCGTCTGGGAATTGAGACAATTAAATTTTACTAAAATAGTTTTCTTAACCCCTGAGGTATTATAA 222 0.3288 MPLERSEVIRVVIVRTYKELKCDNGMIIRYDDNAAVIIDQEGNSKGTRIFGAIVWELRQLNFTKIVFLTPEVL* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0242 73 FunFam Ribosomal protein L14 1 73 - -
Vvi19g0242 73 Pfam Ribosomal protein L14p/L23e 4 73 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vvi19g0242 73 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 72 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vvi19g0242 73 SMART Ribosomal_L14_2 3 73 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vvi19g0242 73 SUPERFAMILY Ribosomal protein L14 2 73 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vvi19g0242 73 Gene3D Ribosomal protein L14 1 73 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0242 Vvi-Chr19 2605535 2605756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0242 2 60 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 37.288 1.61e-06 40.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0242 K02874 - vvi:4025019 118.627