Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0236 ATGGGGTTTAATGGATTGATGCGGTGGTGGCTGGTTTTTGCTGGGTTTTTGTGCTGCTGTGAAGGGTTTAAGTTCATCGTCGGTGGAAAGGGTGGGTGGGTGGAGAACCCTTCTGAGGAGTATAATCAGTGGGCGGGGAGGAACAGGTTTCAAGTGAATGACACTCTCTTTTTTAAGTATCAGAAGGGGGTGGGGTCTGTGTTGGTGGTGGAGAAAGATGACTACTTCAGTTGTAATACAGAGAAGCCGATAATGAAAATGGATGATGGTGAATCGGAGTTCAAGTTTGATAGATCGGGTCCCTTCTTCTTCATCAGTGGAAATAAGACCAGCTGCGATCATGGCCAGAAGTTCATCGTCGTCGTTTTGTCTCCCGACCATTTCAAGCCCCGTCCAGCTGTGCCTCCGGCGTCGCCTCCTAAAGCCTCTGCACCAGCCCCACCGCCGTATACAGCACCTGCTTCACCGCCGAAGTCGGCGTCCCCTGGTCCTTCGCTCCCACCAGCCTTGTCGCCGAATTCTCCATCTCCGGTTGCTCCGACACCGGCGAAGACACCCGAGCTATCTCCTACACCTGCGCATTCTCCGGAACAGTCTCCGGCGCCGTCGAATTCTCCATGGTCGCCGTCTCCCACACCCTCCATCTCTCCAGCGCCCTCGTATTGGTCGCCGTCTCCAACCCCTTCCTATTCTCCTGCGCCGTCAAATCCTCCATCATCGCCGTCTCCAACACCCTCTCCTGGACCGGCAAATTACCCATTGGCGCCGTCACCTCAGCCAAACTCTCCAACAACTTCTCCAAATCCTTCACCCCCCACTTCGTCTCCTCCTGTTCCAGCCACAACCCCACCTTCACCTTCGACGTCTACTCCCGCCACCCCACCTTCATCTTCGACCTCTACTCCGGCCGCCGTCATTTCACCGGCACCGACACGGTCATCGGCAACTGTTATTGCACCGTCAACGGTTACCTTGTCATCCGTGGTTATTACAATACTGATTATTGCTTTAGGCCGCTTGTTTTAA 1026 0.5448 MGFNGLMRWWLVFAGFLCCCEGFKFIVGGKGGWVENPSEEYNQWAGRNRFQVNDTLFFKYQKGVGSVLVVEKDDYFSCNTEKPIMKMDDGESEFKFDRSGPFFFISGNKTSCDHGQKFIVVVLSPDHFKPRPAVPPASPPKASAPAPPPYTAPASPPKSASPGPSLPPALSPNSPSPVAPTPAKTPELSPTPAHSPEQSPAPSNSPWSPSPTPSISPAPSYWSPSPTPSYSPAPSNPPSSPSPTPSPGPANYPLAPSPQPNSPTTSPNPSPPTSSPPVPATTPPSPSTSTPATPPSSSTSTPAAVISPAPTRSSATVIAPSTVTLSSVVITILIIALGRLF* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0236 341 CDD OsENODL1_like 23 123 IPR041846 -
Vvi19g0236 341 Gene3D - 23 126 IPR008972 -
Vvi19g0236 341 FunFam Early nodulin-like protein 1 22 127 - -
Vvi19g0236 341 SUPERFAMILY Cupredoxins 22 123 IPR008972 -
Vvi19g0236 341 PANTHER BLUE COPPER PROTEIN 24 197 IPR039391 GO:0009055
Vvi19g0236 341 ProSiteProfiles Phytocyanin domain profile. 23 124 IPR003245 GO:0009055
Vvi19g0236 341 Pfam Plastocyanin-like domain 33 116 IPR003245 GO:0009055
Vvi19g0236 341 MobiDBLite consensus disorder prediction 130 291 - -
Vvi19g0236 341 MobiDBLite consensus disorder prediction 292 314 - -
Vvi19g0236 341 MobiDBLite consensus disorder prediction 130 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0236 Vvi-Chr19 2541766 2542879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0236 13 253 Phytocyanin Superfamily AT5G53870 46.586 6.63e-52 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0236 - - vvi:100247026 401.749