Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0231 ATGGCTTCAGAGAAGAAACTCTCAAACCCAATGAGGGACATCAAGGCCCAGAAGCTCGTCCTCAACATCTCCATTGGAGAAAGTGGAGATCGCCTCACCAGAGCCGCTAAGGTGCGTAATGAGAAGATTGCTTGCTACGTCACTGTCAAGGGCGAGAAAGCAATGCGGCTTCTTGAGAGTGGTTTGAAGGTCAAGGAATATGAGTTGCTGTTGAGGTCACTGGAGGGCTTGAAATTCCTTTCCACCCAGGGAGAGAGGACAAGCCGGAGCCACCACCTGAGGGTCGTCTGCCAGATGCCACCAAAAGATGCGATCACTTGA 321 0.5171 MASEKKLSNPMRDIKAQKLVLNISIGESGDRLTRAAKVRNEKIACYVTVKGEKAMRLLESGLKVKEYELLLRSLEGLKFLSTQGERTSRSHHLRVVCQMPPKDAIT* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0231 106 Gene3D - 3 39 IPR022803 -
Vvi19g0231 106 Gene3D - 40 90 IPR022803 -
Vvi19g0231 106 SUPERFAMILY RL5-like 8 69 IPR022803 -
Vvi19g0231 106 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 39 70 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vvi19g0231 106 FunFam Uncharacterized protein 3 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0231 Vvi-Chr19 2514456 2514848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0231 1 74 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 67.347 4.55e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0231 K02868 - vvi:100246959 198.364