Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0227 ATGGAGAGAAGCTCAAGTCCTGAATCAAAACCCCACCTCCACCCACTAAATAATGGGTGTCTTGGCCTTGATTTGAGTTGGGCATCTCCTTTGATTTCTGCAATGGTGATGCTGGAATTCACTCCAATGACTTTCCTCAAGTGGGCATTGTTGGCTTGTCTTGTTTGTTCCTCTTTAAGCCTTCAAATTCCAAACCTAACCCAATCCTGTGATCCAAATGATTTGCGTGCACTGAAGGAATTTGCAGGAAACCTCACCAATGGGTCAATTTTCTTCCTTTGGTCCAATGATTCTCACTGCTGTAGATGGGATGGTGTTGGTTGTGAGGATTCTAATAATGGGTCGGTTGCTAGTAGAGTCACTAGCTTGATTCTGCCCCACAAAGGCCTCAAAGGAGTGAATTTAACAGCTTTGGGTCGTTTAGATCATTTGAAATTCCTTGATCTTTCAAGCAATCAACTAGATGGTGAATTACCCATGGAGCTCTCAAATCTGCATCAGCTGGAAGTTCTTGATTTGAGCTACAACAAGCTCCTGGGACCAGTTTCAAGATCCCTTCTTGGCTTGAAATCTATAAAGTCACTCAATATTTCAAGCAATTTATTCAGTGGGGATTTCTTGGGAGTTGGAGGGTTTCTGAATCTTGTTGTGTTCAACATAAGCAACAATTTCTTCAATGGCAGTATCAGTTCTCAGTTTTGCAGTTCTTCTAATGCAATTCAGATGATTGATTTGTCAATGAACCATTTCACAGGGGGGCTTGAAGGCTTAGGCAACTGCAGCTTTACATCTCTCCAGAACCTGCATGTGGATTACAATTCTCTTTCAGGCCAGCTTCCAGAGTTTTTGTTTTCATTGCCATCTTTGGAGCAGCTCTCGATCCCCGGCAACAATTTCTCCGGCCATTTAAGCAGAAAATTGAGTAAGCTCCACAGCCTTAAAGCCTTGGTTATATTTGGAAACCGATTCAGGGGTCCAATTCCGAATGTATTTGGGAACCTTACACAACTGGAAATATTAATTGCACACTCAAATTCATTCTATGGGGTGCTGCCTTCAACCTTGGCTTTGTGCTCAAAGCTTCGAGTGCTTGATCTTCGAAACAATTCCCTAACAGGTCGTATTGACCTTAATTTCACTGGGTTGCCACATCTCTGTGCGCTTGATCTTGCCACAAATCATTTTTCTGGTTTCCTGCCAAACACACTCTCTAGTTGTAGGGAATTGAAACTCTTGAGCCTTGCTAAGAATGATTTACGAGGCCCGGTCCCTGAAAGTTTTGCAAACCTCAAATACCTTTCGGTTCTCACGTTGTCGAACAACAGTTTTGTGAACTTGACTGAGGCATTATCTGTACTGCAGCAGTGCAAAAATCTTACCACTCTTATCCTTACTAAGAATTTCCATGGAGAAGAAATTCCCAAGAATGTGAAGGGGTTTGAGAGCTTAATGATTTTCGCACTTGGGTATTGTGCACTTCGTGGCCAAATCCCATATTGGTTATTGAATTGCAAGAAGTTGCAAGTCCTTGATTTGTCGTGGAATCACTTGGATGGGAGTATCCCTCCTTGGATTGGTGAAATGGAGAATTTGTTTTACTTGGACTTCTCTAATAACTCGCTCACAGGACGAATACCGAAAAGCTTGACGGAGCTGAAGAGCCTTATCTTCACAAAATGTAACTCGTCAAATATTACTACTTCTGCAGGCATTCCACTATATGTGAAGCGAAACCAGAGTGCAAATGGTTTGCAATACAACCAGGTCTCAAGTTTCCCTCCATCAATATTCCTGAGCAATAACAGAATTAATGGGACAATTTGGCCTGAAATTGGGAAACTTAAACAGCTCCACGTCTTAGATTTGAGCAGAAACAACATTACAGGTACCATCCCTGACTCCATTTCGAACATGGGAAATTTGGAAGTTCTGGATTTATCATGCAATGACCTGCATGGGGAGATCCCTTCATCATTGAACAAGCTCACTTTCCTATCAAAGTTCAGTGTGGCTGACAATCAGTTGCGTGGAATGATTCCCACTGGGGGGCAGTTCCTAAGCTTTCCCAACTCGAGCTTTGAGGGTAACCCTGGCCTCTGTGGAGAAGTGTATATTCCTTGTGACACTGATGATACTATGGACCCGAAACCAGAGATCAGAGCAAGCTCGAATGGTAAATTTGGTCAAGGCAGTATCTTTGGAATAACAATCAGTGTAGGAGTTGGGATTGCTTTACTTCTGGCAGTTGTTTGGCTTAGAATGTCAAGGAGAGATGTGGGGGATCCAATCGTTGATCTGGATGAGGAAATCAGCCGGCCACACAGGCTATCTGAAGTGCTTGGGTCTTCAAAGCTGGTCCTGTTTCAGAATTCAGGTTGCAAGGATCTCTCAGTAGCAGACTTGTTGAAGTCAACAAACAATTTCAACCAAGCAAATATAATTGGTTGTGGTGGATTTGGTCTGGTTTACAAAGCCAATCTTCCTGATGGCACAAGGGCTGCAATCAAGAGGCTTTCTGGGGATTGCGGGCAGATGGAGCGCGAGTTTCGAGCTGAAGTGGAAGCCCTCTCAAGAGCTCAGCATAAGAATCTTGTTTCTCTTCAAGGGTATTGCCGGCATGGTAATGATAGATTGTTAATTTACTCCTACATGGAGAATGGAAGCTTGGACTATTGGCTGCATGAAAGAGTTGATGGAGGTTCATTTCTTACATGGGACACAAGAGTCAAGATTGCTCAAGGAGCAGGTCGGGGATTAGCTTACTTGCACAAGGTTTGTGAGCCAAGTGTAGTTCATCGAGACATTAAATCTAGCAACATTCTTTTGGATGAAACATTTGAAGCTCATTTAGCAGATTTTGGTCTCTCAAGGCTACTTCGGCCTTATGATACTCATGTAACAACGGATTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATATAGTCAGACATTAACAGCAACCTTCAAAGGTGATGTTTACAGCTTTGGTGTTGTTCTTCTCGAGCTTCTTACTGGTAGGAGGCCTGTGGAAGTATGCAAAGGAAAAAATTGTAGGGACTTGGTGTCATGGGTGTTTCAGATGAAATCAGAGAAGAAAGAGGAGCAGATTATGGATTCATCGGTTTGGGATAAGGATCGTGAGAAGCAGTTCTTAGAAGTGCTTGGTATTGCCTGTAGATGTATAGACCAAGATCCAAGGCAGAGACCCTCAATCGATCAAGTTGTCTCATGGCTTGATGCTGTTGGAAAGGAGGGCGTGTAA 3264 0.4308 MERSSSPESKPHLHPLNNGCLGLDLSWASPLISAMVMLEFTPMTFLKWALLACLVCSSLSLQIPNLTQSCDPNDLRALKEFAGNLTNGSIFFLWSNDSHCCRWDGVGCEDSNNGSVASRVTSLILPHKGLKGVNLTALGRLDHLKFLDLSSNQLDGELPMELSNLHQLEVLDLSYNKLLGPVSRSLLGLKSIKSLNISSNLFSGDFLGVGGFLNLVVFNISNNFFNGSISSQFCSSSNAIQMIDLSMNHFTGGLEGLGNCSFTSLQNLHVDYNSLSGQLPEFLFSLPSLEQLSIPGNNFSGHLSRKLSKLHSLKALVIFGNRFRGPIPNVFGNLTQLEILIAHSNSFYGVLPSTLALCSKLRVLDLRNNSLTGRIDLNFTGLPHLCALDLATNHFSGFLPNTLSSCRELKLLSLAKNDLRGPVPESFANLKYLSVLTLSNNSFVNLTEALSVLQQCKNLTTLILTKNFHGEEIPKNVKGFESLMIFALGYCALRGQIPYWLLNCKKLQVLDLSWNHLDGSIPPWIGEMENLFYLDFSNNSLTGRIPKSLTELKSLIFTKCNSSNITTSAGIPLYVKRNQSANGLQYNQVSSFPPSIFLSNNRINGTIWPEIGKLKQLHVLDLSRNNITGTIPDSISNMGNLEVLDLSCNDLHGEIPSSLNKLTFLSKFSVADNQLRGMIPTGGQFLSFPNSSFEGNPGLCGEVYIPCDTDDTMDPKPEIRASSNGKFGQGSIFGITISVGVGIALLLAVVWLRMSRRDVGDPIVDLDEEISRPHRLSEVLGSSKLVLFQNSGCKDLSVADLLKSTNNFNQANIIGCGGFGLVYKANLPDGTRAAIKRLSGDCGQMEREFRAEVEALSRAQHKNLVSLQGYCRHGNDRLLIYSYMENGSLDYWLHERVDGGSFLTWDTRVKIAQGAGRGLAYLHKVCEPSVVHRDIKSSNILLDETFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATFKGDVYSFGVVLLELLTGRRPVEVCKGKNCRDLVSWVFQMKSEKKEEQIMDSSVWDKDREKQFLEVLGIACRCIDQDPRQRPSIDQVVSWLDAVGKEGV* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0227 1087 Gene3D Ribonuclease Inhibitor 72 255 IPR032675 -
Vvi19g0227 1087 SMART serkin_6 808 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0227 1087 FunFam Leucine-rich repeat receptor-like protein kinase 884 1087 - -
Vvi19g0227 1087 FunFam Phytosulfokine receptor 1 771 883 - -
Vvi19g0227 1087 SUPERFAMILY L domain-like 262 686 - -
Vvi19g0227 1087 Gene3D Ribonuclease Inhibitor 256 446 IPR032675 -
Vvi19g0227 1087 ProSitePatterns Protein kinases ATP-binding region signature. 814 836 IPR017441 GO:0005524
Vvi19g0227 1087 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 264 1080 - -
Vvi19g0227 1087 SUPERFAMILY L domain-like 94 361 - -
Vvi19g0227 1087 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 280 375 - -
Vvi19g0227 1087 Gene3D Ribonuclease Inhibitor 447 711 IPR032675 -
Vvi19g0227 1087 Gene3D Transferase(Phosphotransferase) domain 1 884 1084 - -
Vvi19g0227 1087 Gene3D Phosphorylase Kinase; domain 1 774 883 - -
Vvi19g0227 1087 Pfam Protein kinase domain 809 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0227 1087 CDD STKc_IRAK 814 1080 - -
Vvi19g0227 1087 FunFam Leucine-rich repeat receptor-like kinase 73 200 - -
Vvi19g0227 1087 SMART LRR_typ_2 504 528 IPR003591 -
Vvi19g0227 1087 SMART LRR_typ_2 638 662 IPR003591 -
Vvi19g0227 1087 SMART LRR_typ_2 430 453 IPR003591 -
Vvi19g0227 1087 SMART LRR_typ_2 262 286 IPR003591 -
Vvi19g0227 1087 SMART LRR_typ_2 165 189 IPR003591 -
Vvi19g0227 1087 SMART LRR_typ_2 614 637 IPR003591 -
Vvi19g0227 1087 SMART LRR_typ_2 334 357 IPR003591 -
Vvi19g0227 1087 SMART LRR_typ_2 382 405 IPR003591 -
Vvi19g0227 1087 SMART LRR_typ_2 141 164 IPR003591 -
Vvi19g0227 1087 Pfam Leucine rich repeat 616 675 IPR001611 GO:0005515
Vvi19g0227 1087 Pfam Leucine rich repeat 360 419 IPR001611 GO:0005515
Vvi19g0227 1087 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Vvi19g0227 1087 FunFam Tyrosine-sulfated glycopeptide receptor 1 379 712 - -
Vvi19g0227 1087 Pfam Leucine Rich Repeat 506 525 IPR001611 GO:0005515
Vvi19g0227 1087 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Vvi19g0227 1087 SUPERFAMILY Protein kinase-like (PK-like) 791 1079 IPR011009 -
Vvi19g0227 1087 PRINTS Leucine-rich repeat signature 144 157 - -
Vvi19g0227 1087 PRINTS Leucine-rich repeat signature 165 178 - -
Vvi19g0227 1087 Pfam Leucine rich repeat N-terminal domain 72 108 IPR013210 -
Vvi19g0227 1087 ProSiteProfiles Protein kinase domain profile. 808 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0227 Vvi-Chr19 2495076 2499659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0227 85 375 Receptor kinase-like Gene Family AT1G55610 29.530 5.71e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vvi19g0227 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0227 - - vvi:100260504 2073.13