Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0226 ATGGAATCCAAGTCTTCTACCACCCCAAAAGCCCTGGAAACCAAGCTTGCTTTCAAAGAAAAAGTTGCGCCAAAGCAAGAGACTGGTGCAATTGACTTTGACTTTGAAGAAGAAGAAGATGATGATGATGATTACCCTTATGGTGGTAGGGCGCTGTTTAAGGATGATGATGGTATTAACAAGAAGAAGAAAACGGTGGCTGCTGTGTCAGGTAGCCGGAGTGGTGGTGGTGGGGTGGGGTCGCCCTGCTGCCAGGCGGAGAAGTGTGGGGCTGACTTGACTGATGCCAAGCGGTATCATCGACGGCATAAGGTCTGTGAGGTTCATGCCAAGGCAGCGATGGTTGAGGTGGCCGGGCTCCGGCAGCGGTTTTGTCAGCAATGCAGCAGGTTCCATGAGTTGTCTGAGTTTGATGAAGCCAAGAGGAGTTGCCGGAGGCGGTTGGCCGGCCACAATGAGAGGCGGAGGAAGGGTGCATCGGAGTCTCAGAATGCAGAAGGGTCAGGCGGGAAAGAGAAGGAAAATCAGTGCAGGCAAGCCGAGGAAAGAGCTGCAGGCAGAGTTGAGATCAACCTCCCTGGAACCTCTTCTTATAAGCATTTCCAGATCAGATGA 615 0.5236 MESKSSTTPKALETKLAFKEKVAPKQETGAIDFDFEEEEDDDDDYPYGGRALFKDDDGINKKKKTVAAVSGSRSGGGGVGSPCCQAEKCGADLTDAKRYHRRHKVCEVHAKAAMVEVAGLRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKGASESQNAEGSGGKEKENQCRQAEERAAGRVEINLPGTSSYKHFQIR* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0226 204 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 55 164 IPR044817 GO:0003677
Vvi19g0226 204 Gene3D - 75 145 IPR036893 GO:0003677|GO:0005634
Vvi19g0226 204 MobiDBLite consensus disorder prediction 154 185 - -
Vvi19g0226 204 MobiDBLite consensus disorder prediction 149 204 - -
Vvi19g0226 204 ProSiteProfiles Zinc finger SBP-type profile. 81 158 IPR004333 GO:0003677
Vvi19g0226 204 FunFam Squamosa promoter-binding-like protein 14 76 145 - -
Vvi19g0226 204 SUPERFAMILY SBT domain 82 160 IPR036893 GO:0003677|GO:0005634
Vvi19g0226 204 Pfam SBP domain 84 157 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0226 Vvi-Chr19 2484493 2485658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0226 61 204 SBP-box Gene Family AT3G15270 58.621 5.57e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi19g0226 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0226 - - vvi:100255434 377.096