Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0225 ATGGCTGGCAAAGAAATCATCAATAAGATGAAGGAAAAAGTTGGGTTGGGTTCATCTTCCTGTGACACTGGCAAAGGGAAGAGCAAGATGTCAAAGAACATAACACATGGCTATCACTTGGTAAAGGGAAAATCAAACCATGCCATGGAAGATTATGTTGTTGCACAATTTAAGAAAGTTGATGACAAAGAGCTTGGTCTGTTTGCAATATTTGATGGTCACTTGAGCCATGATATTCCTAATTATTTGCGGTCTCATTTATTTGATAATATTTTGACAGAGCCTGACTTCTGGACTGAAACGGAGGAGGCAATTAGAAGAGCATATCATAATACTGATACTACAATTTTGGAGAAATCAGCTGATTTGGGTAAAGGGGGATCAACAGCAGTTACAGCAATATTAATTAATGGGCATAAGTTGATAGTAGCCAATGTCGGGGATTCTCGAGCTGTCATATGCAGAAATGGGGTGGTCAAACAACTATCAGTTGATCATGAGCCGAGCAAGGAACGAAAGAACATTGAGGACAGAGGTGGTTTTGTATCAAACTTCCCAGGGGATGTTCCTCGTGTTGATGGGCAGTTGGCTGTTGCAAGGGCTTTTGGTGACAAGAGCTTGAAGGGACACCTCAGTTCAGAACCAGATGTGGTGGTAGAGCACATACATGATGATACAGAGTTTGCTATTTTGGCAAGTGATGGATTATGGAAGGTAATGACGAACCAAGAAGCAGCAGACTCAATCAAGAACATAAAGGATGCCAGGGCTGCAGCAAAGCACCTTACTGAAGAGGCACTGATTAGGAAGAGCACAGACGATATCTCCTGCATAGTAGTAAGATTCCAGTGA 852 0.4202 MAGKEIINKMKEKVGLGSSSCDTGKGKSKMSKNITHGYHLVKGKSNHAMEDYVVAQFKKVDDKELGLFAIFDGHLSHDIPNYLRSHLFDNILTEPDFWTETEEAIRRAYHNTDTTILEKSADLGKGGSTAVTAILINGHKLIVANVGDSRAVICRNGVVKQLSVDHEPSKERKNIEDRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKGHLSSEPDVVVEHIHDDTEFAILASDGLWKVMTNQEAADSIKNIKDARAAAKHLTEEALIRKSTDDISCIVVRFQ* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0225 283 Gene3D - 17 283 IPR036457 -
Vvi19g0225 283 FunFam Probable protein phosphatase 2C 39 25 283 - -
Vvi19g0225 283 SMART PP2C_4 25 280 IPR001932 -
Vvi19g0225 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Vvi19g0225 283 PANTHER PROTEIN PHOSPHATASE 27 282 IPR015655 GO:0004722|GO:0006470
Vvi19g0225 283 SUPERFAMILY PP2C-like 31 282 IPR036457 -
Vvi19g0225 283 CDD PP2Cc 36 282 IPR001932 -
Vvi19g0225 283 Pfam Protein phosphatase 2C 47 275 IPR001932 -
Vvi19g0225 283 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0225 Vvi-Chr19 2465076 2470429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0225 1 283 PP2C-type Phosphatase Gene Family AT3G15260 76.471 1.54e-160 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0225 K17506 - vvi:100241870 567.385