Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0223 ATGGTGGGCTCAGGAGGATCAGATAGGAGCAAAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCAAGAGTTAGAGGAGGTAATGGGTGCAAGGTTGGAGATGACAACGGCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGAGGCAGAGTTGGAGAGTGTCTGGAAGAGATTGATGGTGAAGATCCTGTCAGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGGGTTGATGGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGAGCCTTCAGAGTGTGAACCAAATGTCTCCAACTACTGGCAGAGTTCTTTTGATGCTCTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAGACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTATACCGGAAGACCTTCATTTTGTGCTGAGAATGCGGCATACCTTTGAATCTCTTGGGTATCAATCTGGGTTCTACCTCTCCCAGCTCTTCTCTTCAACTAGAAACACTTCCTCTTCTTCCTCACTTCCTTCCAAGCAATCCACCATCCCAAGCCGCCCGCCGCCTCCCATCTTTAATTGGGGCCAAAGGTCGCTTCCATCTGCGACTTCCATGCTTGCTTCTCCCAATTTTCAAAACTCTGCTAGGCTTGGATTTCCACACACGAAAGACGAGACCCATATGTTTCTCCTTCCTCATTCATCTGAAACCCGAATCGAAGATATTATGGCAGATCATGAAAATGACATCAAATGGCCAAATGGGTTGTCTTTCTATAATGCTTTAACTGGACGAAGTGATGACGCCAAGCTTCTGTTCAGCCCTGAGGGGCTAGGAAACAAGCCAGACCAAAATCACCACCCTCTTATCCTCGAAGGAAAGAATCCAAATCCGCATTCGGACTCAAACCCCAATGAGTTTCTGAGCTTGGACAGCCACCCAGAGACCGTCCGGAAGATGGAAAACAAGTTCAAGAGGAGCTTTACCTTGCCTGCAAGAATGGCTTCATCATCATCTTCAACTTCACTCGATCACCATCAGCACCACCCTGTGGAATATAGAAATTCCGAAGCCGGGATGTATCCAGATGTCATGGAGACCTTCTTGGAGTGA 1227 0.4727 MVGSGGSDRSKEAVGMMALHDALRSVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRVGECLEEIDGEDPVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPSECEPNVSNYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSSSLPSKQSTIPSRPPPPIFNWGQRSLPSATSMLASPNFQNSARLGFPHTKDETHMFLLPHSSETRIEDIMADHENDIKWPNGLSFYNALTGRSDDAKLLFSPEGLGNKPDQNHHPLILEGKNPNPHSDSNPNEFLSLDSHPETVRKMENKFKRSFTLPARMASSSSSTSLDHHQHHPVEYRNSEAGMYPDVMETFLE* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0223 408 MobiDBLite consensus disorder prediction 315 350 - -
Vvi19g0223 408 MobiDBLite consensus disorder prediction 334 348 - -
Vvi19g0223 408 MobiDBLite consensus disorder prediction 366 388 - -
Vvi19g0223 408 MobiDBLite consensus disorder prediction 208 229 - -
Vvi19g0223 408 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 19 187 IPR025610 -
Vvi19g0223 408 PANTHER GB|AAF34833.1 1 408 IPR044170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0223 Vvi-Chr19 2457569 2459953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0223 20 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 33.140 1.11e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0223 - - vvi:100264152 830.861