Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0222 ATGGCTGAAGCTGCGGCAATAATGGATGCGACTGGGTCTAGGTTTAGTTCATTGGAGTTGATCGGAAGAGGTTCATTTGGTGACGTCTATAAAGGGTTTGATAAAGAGCTTAACAAAGATGTTGCTATTAAAGTAATTGATTTGGAAGAAGCAGAAGATGAAATTGAGGACATTCAGAAGGAAATCTCAGTTTTATCACAATGTCGATCTCCATATATTACCGAGTACTATGGTTCTTATCTGCACCAAACCAAACTATGGATAATAATGGAATACATGGCTGGCGGTTCTGTTGCTGACCTAATCCAATCTGGTCAACCACTGGATGAAATGTCTATAGCTTGCATTTTACGTGATCTACTCCATGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAGCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAGGTTGCAGATTTTGGCGTTTCTGCGCAATTAACAAGGACAATCTCAAGGAGGAAGACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAGGCGGATATTTGGTCTCTGGGAATAACTGCAATTGAGATGGCAAAAGGGGAGCCTCCACTTGCAGATCTCCATCCAATGAGAGTGCTTTTTATAATACCTCGAGAAAATCCGCCTCAGCTGGATGAGCATTTTTCTCGCCCCATGAAGGAATTTGTTTCATTGTGTTTAAAGAAGGTTCCTGCTGAGAGGCCAAGTGCCAAGGAACTTCTAAAGCACCGCTTTATTAGGAATGCAAGGAAAAGTCCAAGGCTTTTGGAGAGAATAAGAGAGCGCCCAAAATACCAAATAAAGGACGATGCAGAAACCCCCAGGAATGGTCCTAAAGGTATTGGGGAAGGATCTGACACTGTGAAGGTGACAAGAGATTCAAGGGGTGAAGAAACTGTTCGAGCCAGTCAGGGAAAAACCCTGAGAAATGCTGGATGGGATTTCAGCCTTAGTGGCTCACAGAGTACAGGAACCGTTCGAAGTGTCATAAGACCACCTCAGGCTAGAGAAAGGAAACCAGAGGTTTCATATCAGGCTCCCTCAAGAAAAACTGCAGACAGTAACAACCATCTATTGTCTGCATCTGGAAGTGGACGTTATGAATCATCAGAAATTTTTCTTGGAAAAGAGGCTAGGGATGCTTACTACGATGAACAAGACAATTCCCATGAAGATGACGAATTGTCTGTGAGTGGATCAGGAACTGTTGTTGTACGATCTCCAAGAGGATATCAGTCATCTATTCCTTTTAGTGATCAAAGTAGTCTGTCTAGCAATACATATGCTTCTCTTGAGGATGCTTCTACCAGTGGCACTGTTGTTATTCGTAGTCATCATGATGATTCTGATTCTCCTCGAACGCCAAAGTCTAGATTGGGAATCCAAGAAAGGACATCAACTGCCCCACCTGAAGATAGTGCAATAAACCTTGCTGAGGCAAAGGCTGCTATGCAAGGAGGCTTGAGGAAAGGAAATGCTCGTGAGAGGTCTGTATTGGGCAAGGTCAACAAAGATGAGCAGGAAAAAAGAAAAACAGAGCAAATTACAAGCAGCTCTGACTCTTCCAGACATTCTCGTGAGTACTATGATGCACCAAAAGCGTTTGCAAGGTCGCGCCAATCAAGTGATGATGATGAAAGTGCAAGAGCTGCTGTATTGTCATCATCTAAGGCATTATCAATATTGTTCATTCCTTCATTAAAAGAGGCCGGCCTTGATGATTCAAAAGGGGCAATTGGTCATGCAGTGGCAAATGCACTCATAAATATGGAGCGCACAAAGCCTGGGTCCTGTGAAGTTCTTGTCAGCAAGTTACTTCAACACTTGGCTAGTTCAAAGGAATCTTCATTGAAAGACCTTCAGGAGCTGGCAACTCGCGTCTTCACCAAGGGCAAGACAGCTCCTGAAGAAGCAGAAAATGCAAATGCAGAAGCCGATAACAGGAAAAGACAACAGAACAAGGAACTTAACTCGAATCCCAATCTAAGCCCACTTGCAAGGTTCCTCCTCTCAAGATGGCAAGGCCAAGTTTCAAGGGATCTGAGCCCAGCTTAA 2118 0.4315 MAEAAAIMDATGSRFSSLELIGRGSFGDVYKGFDKELNKDVAIKVIDLEEAEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLIQSGQPLDEMSIACILRDLLHAIEYLHNEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSLCLKKVPAERPSAKELLKHRFIRNARKSPRLLERIRERPKYQIKDDAETPRNGPKGIGEGSDTVKVTRDSRGEETVRASQGKTLRNAGWDFSLSGSQSTGTVRSVIRPPQARERKPEVSYQAPSRKTADSNNHLLSASGSGRYESSEIFLGKEARDAYYDEQDNSHEDDELSVSGSGTVVVRSPRGYQSSIPFSDQSSLSSNTYASLEDASTSGTVVIRSHHDDSDSPRTPKSRLGIQERTSTAPPEDSAINLAEAKAAMQGGLRKGNARERSVLGKVNKDEQEKRKTEQITSSSDSSRHSREYYDAPKAFARSRQSSDDDESARAAVLSSSKALSILFIPSLKEAGLDDSKGAIGHAVANALINMERTKPGSCEVLVSKLLQHLASSKESSLKDLQELATRVFTKGKTAPEEAENANAEADNRKRQQNKELNSNPNLSPLARFLLSRWQGQVSRDLSPA* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0222 705 MobiDBLite consensus disorder prediction 515 538 - -
Vvi19g0222 705 Gene3D Transferase(Phosphotransferase) domain 1 12 299 - -
Vvi19g0222 705 MobiDBLite consensus disorder prediction 658 674 - -
Vvi19g0222 705 MobiDBLite consensus disorder prediction 405 549 - -
Vvi19g0222 705 MobiDBLite consensus disorder prediction 368 388 - -
Vvi19g0222 705 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vvi19g0222 705 MobiDBLite consensus disorder prediction 421 463 - -
Vvi19g0222 705 MobiDBLite consensus disorder prediction 649 683 - -
Vvi19g0222 705 MobiDBLite consensus disorder prediction 307 323 - -
Vvi19g0222 705 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0222 705 SUPERFAMILY Protein kinase-like (PK-like) 13 291 IPR011009 -
Vvi19g0222 705 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0222 705 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 10 651 - -
Vvi19g0222 705 MobiDBLite consensus disorder prediction 476 493 - -
Vvi19g0222 705 MobiDBLite consensus disorder prediction 278 297 - -
Vvi19g0222 705 MobiDBLite consensus disorder prediction 324 350 - -
Vvi19g0222 705 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0222 705 Coils Coil 41 68 - -
Vvi19g0222 705 FunFam serine/threonine-protein kinase dst1 isoform X1 12 300 - -
Vvi19g0222 705 CDD STKc_MST3_like 13 287 - -
Vvi19g0222 705 MobiDBLite consensus disorder prediction 278 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0222 Vvi-Chr19 2416383 2440759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0222 1 702 MAP Kinase Kinase Kinase Kinase AT3G15220 67.139 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Vvi19g0222 Pkinase 5.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0222 K08838 - vvi:100258981 1343.18