Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0216 ATGGCGCCGAGAGACAAACCTACCGGCGTAACCGCCGGCGCTACCGGAAACAAGGAGATCCGCTACAGAGGCGTGCGCAAGAGGCCGTGGGGCAGGTACGCCGCTGAAATACGCGATCCCGGCAAGAAGAGCCGCGTCTGGCTAGGCACCTTTGATACGGCCGAGGAGGCCGCGCGTGCCTACGATGCAGCGGCTAGGGAGTTTCGTGGAGCCAAGGCAAAGACTAACTTCCCTTCGCCTACCGACCTTGCGGCAGCTGCCGCGACTACTGCTAACCGGAGCCCTAGCCAGAGCAGCACCGTGGAGTCCTCCAGCCGCGAGGCGCTGTCTCCGGGTGCGATCGCTGGTCCTCCGGCTCTAGATCTCAATCTGTCACACCCCGCCGCCGCCGGCCAATTTTCCGCAGTTCGTTACCCTGCGGTTGGTGTTTTTCCTATTGCGCAGCCGTTGTTCTTCTTCGAGCCATTTTCCCGTCCAGAAAAGCCGAAGACCCACCGCGATATGTTCGATTTAGATCGAGCGGTTGCCGATTTTCACCCTGCGATTGCCGGTAGCGTTCACAGCGACTCCGACTCATCCTCCGTGGTTGATTTCAATTACCATGACCGCAGTACCAGGCTGCTCAATCTCGATCTCAACCATCCTCCAGCGGAAGTCGCTTGA 663 0.5988 MAPRDKPTGVTAGATGNKEIRYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPSPTDLAAAAATTANRSPSQSSTVESSSREALSPGAIAGPPALDLNLSHPAAAGQFSAVRYPAVGVFPIAQPLFFFEPFSRPEKPKTHRDMFDLDRAVADFHPAIAGSVHSDSDSSSVVDFNYHDRSTRLLNLDLNHPPAEVA* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0216 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 162 - -
Vvi19g0216 220 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Vvi19g0216 220 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Vvi19g0216 220 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Vvi19g0216 220 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Vvi19g0216 220 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Vvi19g0216 220 MobiDBLite consensus disorder prediction 86 107 - -
Vvi19g0216 220 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Vvi19g0216 220 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Vvi19g0216 220 FunFam Ethylene-responsive transcription factor 2 21 79 - -
Vvi19g0216 220 MobiDBLite consensus disorder prediction 86 112 - -
Vvi19g0216 220 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0216 Vvi-Chr19 2368390 2369052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0216 6 154 AP2-EREBP Transcription Factor Family AT3G15210 56.129 2.63e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi19g0216 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0216 K09286 - vvi:100243603 411.764