Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0212 ATGGATGCTTACCATCACTTTGACAACAGTGATGCCCATTTGCCTCCTGGGTTCCGGTTCCACCCGACCGACGAAGAGCTCATCACCTACTACCTCATCAAGAAGGTCCTCGACAGCAACTTCACCGGCCGTGCCATTGCCGAAGTGGACCTCAACAAGTGCGAGCCATGGGAGCTTCCTGAAAAAGCAAAGATGGGAGAGAAGGAGTGGTACTTCTTCAGCCTCCGCGATCGGAAGTATCCAACTGGCCTCCGAACCAACCGGGCCACAGAAGCTGGCTACTGGAAGGCCACTGGGAAAGACAGAGAGATTTACAGCTCGAAGACTTGTTCACTTGTGGGGATGAAGAAGACACTCGTTTTCTACAGGGGGAGAGCCCCGAAGGGAGAGAAGAGCAACTGGGTCATGCATGAATATCGCCTGGAAGGCAAATTCGCCTACCATTACCTCTCCAGGAGCTCCAAGGACGAGTGGGTCATTTCCCGTGTGTTCCAGAAGAGTGGCTCCAGCGGCGGCGGAGGGGCTACCGGAGGGAAGAAGGCGCGGCTGAGTTCCACCGTTAACCTTTACCCAGAGGTGAGCTCGCCCTCGTCGGCCTCCCTCCCGCCCCTCCTCGACGTCTCTCCCTACGCTGGTACTTCCGCCGCCGCCGCCGTCAATGACCGCGAGAGTTGCTCCTACGACGGCGGCGAAAGCAGCAACAACAGCAATGCGCGTGACCAGCACGTGCCCTGGTTCTCCACAATCGCCGCAGCGGCCGCAGCCGCTGCTGCCAACTCCTTCAACGCCCACCACCAACCCCCGCCGTTCGACCTTGCTCCCCCTTCCATCATCGGTTCAATCGACCCCTCCCGCTTCCCGCGAAACGGCGCCGTTCCAGCTTTTCCCAACCTGAGGTCTCTCCAGGAAAATCTGCACTTGCCTTTCTTCTTCTCCCAGGTAGCCCCACCAATCCCCAGCTCCGGTGACCCCTCCACCGAGATGGGCATCACCAATTCGGCTGGAAACTGGCCGGCCCCAGAAAATCAAAAGATGGACAACGGCAGATTACCAATGGGAGCCACTGAGCTCGATTGCATGTGGTCATACTGA 1092 0.5833 MDAYHHFDNSDAHLPPGFRFHPTDEELITYYLIKKVLDSNFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKSGSSGGGGATGGKKARLSSTVNLYPEVSSPSSASLPPLLDVSPYAGTSAAAAVNDRESCSYDGGESSNNSNARDQHVPWFSTIAAAAAAAAANSFNAHHQPPPFDLAPPSIIGSIDPSRFPRNGAVPAFPNLRSLQENLHLPFFFSQVAPPIPSSGDPSTEMGITNSAGNWPAPENQKMDNGRLPMGATELDCMWSY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0212 363 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Vvi19g0212 363 SUPERFAMILY NAC domain 11 166 IPR036093 GO:0003677|GO:0006355
Vvi19g0212 363 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Vvi19g0212 363 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
Vvi19g0212 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 234 - -
Vvi19g0212 363 FunFam NAC domain-containing protein 100-like 23 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0212 Vvi-Chr19 2325829 2327321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0212 4 363 NAC Transcription Factor Family AT5G53950 52.442 7.15e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi19g0212 NAM 8.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0212 - - vvi:100246914 726.087