Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0203 ATGGATGCTTTCCATTCCCAACACCAAAAACACAAGAAGAGGCTAACTCAAGACCAAGTGAGGCTTCTAGAGACAAGCTTCGACCATGGGAAGAAGCTTGAGCCCGAGCGCAAGCTCCACCTCGCGCGGGAGCTTGGAGTGCCGCCTAGACAAGTCGCTATTTGGTATCAAAACAAGCGAGCGCGATGGAAGACGCAGAACTTGGAGCTTGACTATAATGTGATTAGAGTAAGGCTAGAGCATGCCTTGATCGAAAAAAGGAGACTCGAGAGAGATGTCATAAGACTCCAAGGGGAGTTGGAGAAGGCGCATGAGATGTTGCATGCTTTGAACTATGCAAACCCTAATCCTCCTCCTATTGTTTCTACTGTACTCTCTAGTATTTCTTGCGATGAGGGAGGTAGCACTTTGGAGAATAACGAGGAATTTCAATTCGAAAATCTCTATGCGTCTTTGATGGGTGTAGATGGATCAAATTGGGTTTAA 486 0.463 MDAFHSQHQKHKKRLTQDQVRLLETSFDHGKKLEPERKLHLARELGVPPRQVAIWYQNKRARWKTQNLELDYNVIRVRLEHALIEKRRLERDVIRLQGELEKAHEMLHALNYANPNPPPIVSTVLSSISCDEGGSTLENNEEFQFENLYASLMGVDGSNWV* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0203 161 Gene3D - 5 71 - -
Vvi19g0203 161 ProSiteProfiles 'Homeobox' domain profile. 6 66 IPR001356 GO:0003677
Vvi19g0203 161 FunFam Homeobox-leucine zipper protein ATHB-52 2 68 - -
Vvi19g0203 161 Pfam Homeodomain 10 64 IPR001356 GO:0003677
Vvi19g0203 161 SMART HOX_1 8 70 IPR001356 GO:0003677
Vvi19g0203 161 ProSitePatterns 'Homeobox' domain signature. 41 64 IPR017970 GO:0000981|GO:0006355
Vvi19g0203 161 CDD homeodomain 10 67 IPR001356 GO:0003677
Vvi19g0203 161 Coils Coil 79 106 - -
Vvi19g0203 161 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 127 IPR045224 GO:0003700
Vvi19g0203 161 PRINTS Lambda-repressor HTH signature 46 62 IPR000047 GO:0003677
Vvi19g0203 161 PRINTS Lambda-repressor HTH signature 37 46 IPR000047 GO:0003677
Vvi19g0203 161 SUPERFAMILY Homeodomain-like 8 75 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0203 Vvi-Chr19 2271567 2272052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0203 1 161 Homeobox Transcription Factor Family AT5G53980 43.636 1.78e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi19g0203 Homeodomain 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0203 - - vvi:100258893 324.709