Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0200 ATGCGATTGTCGTCGGGATCGGTTTCTTCATCGAAGCGAGTGAAAAATCATCGTTCGAACTCTCGAACTCGAACGAAGCACAAAAAACTCGACGCCATATGCGAGAAAACCTATAATCGGAACCGCGGCGTTTCTGGCGAATCAAATGAGGGCAATGGTGGGGCGGGGTCGGCGGGCGTTGATTCAGAGCTGCGGCGGAGTTCGAGGGTCCGCCGCGCTCCTGTTTTGCTTGATTCCTCGCCGCCGCCATCGAAAAAGCGGCGGAGGATCGACTGGAATGGGGAGAGTTTCAGTAAGAGGAGGGAGAAAGGGAAGGCGGTGGTGAGGAGTTGTTCATCACCAGGCGAGGATTCAGGGGAATTGAAAGAAGGAGAGGTTTGGAAATCGAGGTTGAGATCTAGGGCTAAAACTAAAAGGGTGCGTTTTGTGGAGAAGGATAAAGAGGCATCAGCGAGTGGGAAGAGGAAGCTTTTCAGGGATATGGATGGGTGTCGGGAAGAAGAGACTATGGTAGAGAGAGAATTGGATGAGAAGAAGGAGGAATTGGATGGGGGAAAATCCACAGTTGTGAGGTCGAAGAGGCCTGGGAGGATTAAGGCTTCCAATGTTTTGGGGAACAGTGAAGAAGAGATTGATTTGCAGAGTAATAAAGGGGTTGAGGATGAGAGGGTTGAAGTGGAGATGTTAGTGGATAAGGGAGAGCGGGATTTTTTGGTTTTGAACAGTGAAATGGACGGTGGAAACGAGGTTGAAGCAGTAGAGGGTGGAAACGAGGTTGAAGCAGTTGGAAACGAGGTTGAAGCAGGGGTTGGAGCAGTTGGAAACGAGGTTGAAGCAGTGGATGGTGAAAACGAGGTTGAAGCAATTGGAAATGAGGTTGAAGCAGTGGATGGTGGAAACGAGGTTGAAGCCGTGGATGGTGAAACCGCAGATTTATTGGAGAAAGAAAAGAGTGAAAACCAAAATGGTTTATCTGGTAATGACAATGTGGAAACTATTGAACAGAATGATAAGCAGATGGAACATCCAGAGTGTGTGAATGAAGGAGAAAATGAAAGAGATGTTTTAGAAGTTGGAGTTGCTGCAAGCCAAGTGGAAGATGTAGTGGACCATGATGGCCAGGATGCTTGTTTGGACAATCCTGATGAAAAACCTGTGGAACCCGAGAATTCCATGGGGGTTGATAAGTCCAATAAAGCCTTGGCATACACACTTGGCAAACCTCGGATAAAAGAGGGGAGGCGATGTGGTCTTTGTGGTGGAGGAACTGATGGTAAACCTCCGAAGAGAGTAGTCCAGGATATTGGTGAGAGTGAAAATGAGGCATGTAGTGGTTCTTCAGCTTCTGATGAGCCTAACTATGACCCATGGGATGGATTTGGTGATGAACCTAGCTGGCTTGGACGTCTCTTGGGTCCTATAAATGATCGTTATGGTATTGCTGGGATCTGGATTCATCAACACTGTGCTGTTTGGAGTCCTGAGGTTTATTTTGCTGGTTTGGGATGCTTGAAGAATGTTAGGGCCGCACTCTGCAGAGGAAGAGCATTGAAATGCAGTCGCTGTGGGAGGCCAGGTGCAACTATTGGATGTCGTGTTGATCGGTGCCCAAAAACTTACCACTTGCCTTGTGCACGAGCTAATGGTTGCATTTTTGATCATCGCAAATTTCTTATAGCCTGCACAGATCATCGGCATCTCTTCCAACCTCATGGCAATCAATATTTGCAACAGATAAAGAAAATGAAAGCAAAGAAAATGAAATTGGAAATAAGGAAGGTGTCGAATGATGCTTGCCGGAAAGATCTTGAAGCAGAAGAAAAGTGGTTGGAACACTGTGGTGAGGATGAAGAGTTCTTGAAACGGGAGAGCAAGAGGCTCCATCGAGATATATTGAGAATTGCACCTGTGTATATTGGAGGCCCGGGCTCTGAAGGTGAGAAACTATTTCAGGGTTGGGAGTCTGTTGCTGGGCTTCAAGATGTCATCCGGTGCTTGAAGGAGGTTGTCATCTTACCCTTACTGTATCCTGAGTTCTTTAATAATCTGGGGCTTACGCCTCCTAGAGGTGTTCTTTTGCATGGTTACCCTGGAACGGGCAAAACTCTGGTAGTGCGGGCATTAATTGGATCATGTGCTCGTGGTGATAAGAGGATAGCATACTTCGCACGGAAAGGTGCAGATTGTTTAGGAAAGTATGTTGGTGATGCTGAGCGCCAGCTGAGACTCTTGTTTCAGGTTGCTGAGAGATCTCAACCTTCTATCATATTCTTTGATGAGATAGATGGATTGGCACCTTGTCGTACAAGGCAGCAAGATCAGACACATAGTTCAGTTGTGTCCACTTTGCTTGCTCTATTGGACGGTTTAAAATCTCGAGGTTCAGTTGTAGTAATCGGTGCAACAAATCGTCCTGAGGCTGTTGATCCAGCTTTAAGACGGCCTGGAAGATTTGATAGGGAGATCTATTTTCCTCTGCCATCAGTCAAGGATAGAATTTCTATTCTCTCACTGCACACACAAAGATGGCCGAAACCAGTTACCGGACCCTTGCTTAATTGGATTGCAAGAAAAACTGCAGGCTTTGCTGGGGCTGATCTGCAGGCTCTTTGTACTCAAGCAGCCATTATTGCTTTGAAGAGGAACTGCCCCTTTCAAGCACTTGTGTCTCATGCTGGAGAGAAAGCTCCTGATCGTAATCGCTATCCCCTTCCCTCCTTTGCAGTGGAGGAGAGGGATTGGTTGGAGGCTCTTTCATGTGCTCCACCCCCCTGCTCTCGTAGAGAAGCAGGTATGTCTGCAAATGAAGTAGTATCCTCTCCACTTCCCACCCATCTTATATCTTGTCTACTTCGACCACTATCCAGCCTGCTTGTTTCCCTGTATCTTGATGAATGCCTCTATTTACCTCCTCTTCTTTACAAAGCTGCAAAAATGATTAAAAATGTCATTGTTGGTGCTTTGAGGAAGAAGAAAATGCCTAATGATCATTGGTGGGCCCAAGTTAATGATTTGCTTCAAAAGGCAGATGTTATAAAGGAGATAGAAAGGAACCTGTCATGTCTTGGCATTTTAATTGGAGAGGCTGGTTTTCCATTTTCTGATGCTTTAAATGATGATACTGATGAAGACAGGGTGAGGTTTGACCCTTCGAGGGCATACCACAATGGAATTCACACTACTTTGTTGCGAAATATTTCGTATACATCAGGAAAGAAATCAGGATTTCGCATTTTGATTGCTGGGAGTCCCCGGTCAGGCCAGAGGCATCTTGCTTCTTGTATTCTCCACTGTTTTGTTGGGAATGTTGAAATTCAAAAGGTTGATTTGGCTACAATTTCACAGGAAGGACGCGGAGATGTACTAGAAGGGCTAACAAGAATATTGATGAAATGCACTAGTGTGGGTTCATGCATGCTATTCTTGCCTAGAATTGATTTGTGGGCTATAGAGACATCTGATCAAGATGATGAAGAGTGTTCCTCTTCAACAGACCATCAATCATCTGAGGAAGAATTCTGTATAACAAACAGTCAAGTTGTTGAAAAGGAAAATGTATCCGGTCCAAGGGCATGCAAATCCACTGAGACAGGAGTGCCTGAAGATGTTTTGCAGAGAGCTTCACATGCATGGAGGTCGTTTATTGAGCAGGTGGATTCCATGTGTGTGTCCACGTCTTTGATAATTCTGGCTACTTCAGATGTGCCATATGCAGCATTGCCTAAAAGAATAAGGGAGTTTTTCAAGACTGATATATTGAACTACAGTTGTTCAGCTTCTTCGGAACACACTGTACCCCAATTCTCTGTGCAGGTTGATGGGAACTTCAATCGTGATACGTTGATTGATTCATCAGCAACAGAATTGTCGAGGGATTTGGTTCAGCAGTTTGTTCAGTTGATTCATCATAGAACTCACATTCTTACAAGTGTTTTCGAGGAGTACAAAGCTTGTGATACAAGTCAAGGTAATAAAGATATGGTATATCATGGTGCAGATCATGTACTGGCCAATGAAGGTGAGGATAGAGCTCAGTGTCCTGAAGAATCTGTTGCAAAGGTCCCATCTCCACCAAACAGTAGAACTGTGAAAGGGAAATCAAACCTGTTATTAGCAATATCTACATTTGGCTATCAAATGCTTCGATATCCTCATTTTGCTGAACTTTGTTGGGTCACATCCAAACTCAAAGATGGTCCCTGTGCAGACATAAATGGACCATGGAAAGGCTGGCCATTCAATTCTTGTATTATTCGTCCTAGTAACTCATTAGAAAAGGTAGCTGTCGCTTGTAGCCCCAGCAATACTAAAAGCAAAGAAAAATTTGGTCTAGTTAGGGGCCTAGTTGCCGTTGGTTTATCAGCATACAGAGGTGCATATGTATCACTTAGAGAAGTTTCCCTTGAGGTTCGAAAGGTTCTGGAGCTCCTGGTTGATCAAATTAATGCTAAAATTCAATCTGGAAAAGATAGATATGAATTTGGTCGTATTTTGTCACAAGTGGCTTGCTTGGAAGATATGGTCAATAGCTGGGTATACACACTACAGAGTTTAGAGGTGGACGGTCAAATGACAGTGGTAAACCCTAAGCCTGGTACTGTAGGATCTTCAAGCTATGCATGTGGGGATGATGTGGATAATCTAATCGAAAGCAAGGAATGTGGACCAAATGTTTCTAACAGAAGCTCACATGAAGAAGTACCAGAAGAAAGGCCTGAAGGATTTACTTCTGAAAATACTGGATTTGTTAATTTGCACAAAGGAGATGTCAATTCTGGTGATCCTAATCTGAAGGAGGGAGTTCCACTCTCAGAAAAGTCTCCACTTCAAACAGCCTTCTTGACTGATTCTGCCCCTGTCGAACAATTTCAGAGTTCTTTGGCTGCCAACTTTTTGGATGGTAAAGTTCCAAACATGCATGATGGGACTTCTAAATCATTCAAGTCAGAAAATTCTGTGAAGTGTATGGTGAATAAGGGAGATTCTGGACTCTGGAGACAGTCTAATGGATTTGCATTCGTGGAACCCGTGGTCCATTCTGAAGATTCCCTATGTAGTGCAGGTGAATTGAGTGGCCTTAAGTTGTCTAGCTGTGGAAAGTTTTGCAACCAGTTCAATGGTTTATCCATGGCGGAGACTGATATTCCACCTCCAGATGGTAAGTCTATCCCTGATGAGCCTATTGTCAATGTCAACGTCTCTTCAATCAAAACTACAAATATTGCAGCTGATTCAGGGGTCATTTGTTTGTATCGTTGTTGTGCTGAATGCCTGTATACCCTCCATAGTTTGATGCAGAAAATTCTCATTCGTGAATGGGAAGTGAATGGGACCTATTGGACGGTAGAGGATGTTCATGATGTTGTTGCATCATTATCTGTTGATCTTCTTTCAGCAGTTAGAAAAAATTATGCTGCTGAAAGTTTCGGCAATTTATTTGACAAAAAGATGAGACAAGAAAATCATGGCAAATTGTCTGAATGTCAGGAAATGAGCATATGTCAGTGTAAAAATTCCGGAAATAGGTTAGTAATGCCAATTGAATGTAGTTGTCACTCATTAAACAAGAGTTTGTCTGCAAAAGCAAATCCTTCTCGCCAGCTTGATTTAAAATTCATCTACAGAGATGGTGTACTGGTCCCTATAGATCTTGACAAGGATGTTTCTTTTCACTGTAAATTCGAGACTTTGTGCCTTTGTTCTCTTATAGAGTGGATAGTAATGACCAAGCAACCTTTTGATTGA 5745 0.4372 MRLSSGSVSSSKRVKNHRSNSRTRTKHKKLDAICEKTYNRNRGVSGESNEGNGGAGSAGVDSELRRSSRVRRAPVLLDSSPPPSKKRRRIDWNGESFSKRREKGKAVVRSCSSPGEDSGELKEGEVWKSRLRSRAKTKRVRFVEKDKEASASGKRKLFRDMDGCREEETMVERELDEKKEELDGGKSTVVRSKRPGRIKASNVLGNSEEEIDLQSNKGVEDERVEVEMLVDKGERDFLVLNSEMDGGNEVEAVEGGNEVEAVGNEVEAGVGAVGNEVEAVDGENEVEAIGNEVEAVDGGNEVEAVDGETADLLEKEKSENQNGLSGNDNVETIEQNDKQMEHPECVNEGENERDVLEVGVAASQVEDVVDHDGQDACLDNPDEKPVEPENSMGVDKSNKALAYTLGKPRIKEGRRCGLCGGGTDGKPPKRVVQDIGESENEACSGSSASDEPNYDPWDGFGDEPSWLGRLLGPINDRYGIAGIWIHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCSRCGRPGATIGCRVDRCPKTYHLPCARANGCIFDHRKFLIACTDHRHLFQPHGNQYLQQIKKMKAKKMKLEIRKVSNDACRKDLEAEEKWLEHCGEDEEFLKRESKRLHRDILRIAPVYIGGPGSEGEKLFQGWESVAGLQDVIRCLKEVVILPLLYPEFFNNLGLTPPRGVLLHGYPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAERSQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALLDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVKDRISILSLHTQRWPKPVTGPLLNWIARKTAGFAGADLQALCTQAAIIALKRNCPFQALVSHAGEKAPDRNRYPLPSFAVEERDWLEALSCAPPPCSRREAGMSANEVVSSPLPTHLISCLLRPLSSLLVSLYLDECLYLPPLLYKAAKMIKNVIVGALRKKKMPNDHWWAQVNDLLQKADVIKEIERNLSCLGILIGEAGFPFSDALNDDTDEDRVRFDPSRAYHNGIHTTLLRNISYTSGKKSGFRILIAGSPRSGQRHLASCILHCFVGNVEIQKVDLATISQEGRGDVLEGLTRILMKCTSVGSCMLFLPRIDLWAIETSDQDDEECSSSTDHQSSEEEFCITNSQVVEKENVSGPRACKSTETGVPEDVLQRASHAWRSFIEQVDSMCVSTSLIILATSDVPYAALPKRIREFFKTDILNYSCSASSEHTVPQFSVQVDGNFNRDTLIDSSATELSRDLVQQFVQLIHHRTHILTSVFEEYKACDTSQGNKDMVYHGADHVLANEGEDRAQCPEESVAKVPSPPNSRTVKGKSNLLLAISTFGYQMLRYPHFAELCWVTSKLKDGPCADINGPWKGWPFNSCIIRPSNSLEKVAVACSPSNTKSKEKFGLVRGLVAVGLSAYRGAYVSLREVSLEVRKVLELLVDQINAKIQSGKDRYEFGRILSQVACLEDMVNSWVYTLQSLEVDGQMTVVNPKPGTVGSSSYACGDDVDNLIESKECGPNVSNRSSHEEVPEERPEGFTSENTGFVNLHKGDVNSGDPNLKEGVPLSEKSPLQTAFLTDSAPVEQFQSSLAANFLDGKVPNMHDGTSKSFKSENSVKCMVNKGDSGLWRQSNGFAFVEPVVHSEDSLCSAGELSGLKLSSCGKFCNQFNGLSMAETDIPPPDGKSIPDEPIVNVNVSSIKTTNIAADSGVICLYRCCAECLYTLHSLMQKILIREWEVNGTYWTVEDVHDVVASLSVDLLSAVRKNYAAESFGNLFDKKMRQENHGKLSECQEMSICQCKNSGNRLVMPIECSCHSLNKSLSAKANPSRQLDLKFIYRDGVLVPIDLDKDVSFHCKFETLCLCSLIEWIVMTKQPFD* 1915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0200 1914 ProSiteProfiles Extended PHD (ePHD) domain profile. 445 565 IPR034732 -
Vvi19g0200 1914 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 567 IPR013083 -
Vvi19g0200 1914 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 411 567 - -
Vvi19g0200 1914 PANTHER AAA DOMAIN-CONTAINING 22 1816 IPR045199 -
Vvi19g0200 1914 Pfam PHD-like zinc-binding domain 486 565 - -
Vvi19g0200 1914 SMART AAA_5 687 828 IPR003593 GO:0016887
Vvi19g0200 1914 MobiDBLite consensus disorder prediction 171 191 - -
Vvi19g0200 1914 MobiDBLite consensus disorder prediction 436 455 - -
Vvi19g0200 1914 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 827 919 - -
Vvi19g0200 1914 ProSitePatterns AAA-protein family signature. 796 814 IPR003960 GO:0005524|GO:0016887
Vvi19g0200 1914 Pfam AAA+ lid domain 852 882 IPR041569 -
Vvi19g0200 1914 Pfam ATPase family associated with various cellular activities (AAA) 691 826 IPR003959 GO:0005524|GO:0016887
Vvi19g0200 1914 FunFam ATPase family, AAA domain-containing 2 651 832 - -
Vvi19g0200 1914 MobiDBLite consensus disorder prediction 171 190 - -
Vvi19g0200 1914 MobiDBLite consensus disorder prediction 1 124 - -
Vvi19g0200 1914 Coils Coil 161 181 - -
Vvi19g0200 1914 MobiDBLite consensus disorder prediction 1554 1579 - -
Vvi19g0200 1914 MobiDBLite consensus disorder prediction 82 107 - -
Vvi19g0200 1914 Gene3D - 653 927 IPR027417 -
Vvi19g0200 1914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 653 885 IPR027417 -
Vvi19g0200 1914 Gene3D - 827 919 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0200 Vvi-Chr19 2237461 2251081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0200 683 882 Calmodulin-binding Proteins AT3G56690 40.500 2.95e-40 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0200 - - vvi:100243511 3705.99