Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0180 ATGGGAAGACCGCCCAGTAATGGAGGCCCCGCCTTTCGCTTCACACCCAATGAGGTTGCGGAGATGGAAAATATTTTGCAAGAGCACAATAATTCCATGCCGGCACGTGAAATTCTTGTAGCTCTTTCAGAGAAATTCAGTGCTTCAACGGATCGAGCAGGGAGAATTGTTGTTCAAGTGAAGCAAGTGTGGAATTGGTTCCAAAATAGACGCTATGCTATTAGGGCAAAATCTACTAAAGCTCCTGGGAAGTTAAGTGTGTCGTCTCTGCCTAAGGATGACTTGACTCAAGTGAAAAATGTGCCTCAAGGTCCTCTACCTGCACAACCTGTTCCGCCTGTACAACCTCTACAGCCTATACAACCTACACAACCTACACAACCTGCACAACCTGCACAACCAGCACAACCAGCACAACCTGCACAACCAGCACAACCTGCACAACCTGCACCATTTGCACCAGTTCCAAATGCAGGAAAGAGTGCTCCTTCAGATTCTTCCCAGATGGAGTTCGAAGCTAAATCTGCAAGGGATGGTGCATGGTATGACGTTGCAGCCTTTCTATCTCATAGATATCTTGATACCAGTGATCCGGATGTCCTGGTTCGGTTTGCTGGTTTTGGACCAGAAGAAGATGAATGGGTTAATGTTAAGCGGAACGTTAGACAACGCTCTCTCCCATGTGAATCATCAGAATGTGTCGTAGTTATCCCTGGAGATCTCATACTCTGTTTTCAGGAAGGTAAAGAACAGGCTCTTTACTATGATGCCCATGTCCTTGATGCCCAAAGGAGGAGGCATGATGTGAGAGGTTGTCGTTGTAGGTTTCTGGTGCGCTATGATCATGATCAATCTGAGGAAATTGTGCCACTGAGGAAAGTTTGTCGCCGGCCTGAGACTGATTACAGGTTGCAGCAACTTCATGCTTCAAATGAGTCTGGGTCTGTAGACCAGCAGAAACCTGAACCTTCTTATGGAGGCAGCATATCGAGGATCTTTCCTACGCCACCTGAAATGATGCAGAAGCTCCATGTGGCAGTGGACATTGCGGGTGCTGGTTCAGTTGTGAAGCCTCCTTCTGCTGATACTCCTATGCCTGCTGGAACTACAGCTCCAGAACCAAAACCTCTGGAAATCAGCAGCACTGGTAATGGGGGAAACCCTGGCATTCTCTCAGAAAATGCTGTAGTGACAGGCATCAGTTCTGCAAATGCCATTGCTGGAAACCCCGGTGAGAAATCAGTGCAAGGTTAA 1254 0.4761 MGRPPSNGGPAFRFTPNEVAEMENILQEHNNSMPAREILVALSEKFSASTDRAGRIVVQVKQVWNWFQNRRYAIRAKSTKAPGKLSVSSLPKDDLTQVKNVPQGPLPAQPVPPVQPLQPIQPTQPTQPAQPAQPAQPAQPAQPAQPAQPAPFAPVPNAGKSAPSDSSQMEFEAKSARDGAWYDVAAFLSHRYLDTSDPDVLVRFAGFGPEEDEWVNVKRNVRQRSLPCESSECVVVIPGDLILCFQEGKEQALYYDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHASNESGSVDQQKPEPSYGGSISRIFPTPPEMMQKLHVAVDIAGAGSVVKPPSADTPMPAGTTAPEPKPLEISSTGNGGNPGILSENAVVTGISSANAIAGNPGEKSVQG* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0180 417 MobiDBLite consensus disorder prediction 105 153 - -
Vvi19g0180 417 MobiDBLite consensus disorder prediction 78 171 - -
Vvi19g0180 417 MobiDBLite consensus disorder prediction 357 392 - -
Vvi19g0180 417 CDD homeodomain 13 75 IPR001356 GO:0003677
Vvi19g0180 417 MobiDBLite consensus disorder prediction 307 325 - -
Vvi19g0180 417 MobiDBLite consensus disorder prediction 82 96 - -
Vvi19g0180 417 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Vvi19g0180 417 Pfam SAWADEE domain 168 295 IPR032001 GO:0003682
Vvi19g0180 417 Gene3D - 166 227 - -
Vvi19g0180 417 SUPERFAMILY Homeodomain-like 4 76 IPR009057 -
Vvi19g0180 417 MobiDBLite consensus disorder prediction 307 329 - -
Vvi19g0180 417 MobiDBLite consensus disorder prediction 375 392 - -
Vvi19g0180 417 Gene3D - 228 300 - -
Vvi19g0180 417 Gene3D - 2 84 - -
Vvi19g0180 417 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 317 IPR039276 -
Vvi19g0180 417 SMART HOX_1 7 81 IPR001356 GO:0003677
Vvi19g0180 417 SUPERFAMILY beta-sandwich domain of Sec23/24 102 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0180 Vvi-Chr19 2066046 2074067 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi19g0180 SAWADEE 5.3e-41 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0180 - - vvi:100246907 538.88