Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0178 ATGCAGAGCCTGATGCTTCTCAGCGCAATATTCTTATTCCAACCAATACTGATTCGAGTAGCTATGGATTGTGAAATGGTTGGTGTTGGTTCTGAAGGAAATAAAAGTGCTCTTGGACGAGTGACATTGGTTAATAAGTGGGGAAATGTTATATATGATGAGTATGTTCGCCCAGTTGAATGGGTTGTTGATTTCCGTACAGAAATTAGTGGAATCCGACCCCGTGACTTGAAAAAAGCTAAGGATTTCCAGACTGTTCAGAGGCAAGTGGCAGAGTTGATTAAAGGAAGACTTCTTGTTGGTCATGCGTTACGTAATGATCTTAAGGCTCTGCTATTAAGTCATCCAAAGGTGGACATGCGAGATACATCTGAGTGTGAACTCTTTTTAAAGGAAGAACGCAGGAGGGTGGCCCTTCGACATCTTGCAGCTGAGTTTCTTGGTGTTAAGATCCAGAATGGAGAGCACTGCCCTGTAGAAGATGCCCGCGCTGCAATGCTGCTTTATCAGAGAAACAGAAAACAATGGGAGAAGAATATCAAAGATCAGATTAGGCTGAGGCAAAAGCAGAAGAAACGGAAGCAGAAAAAGAAACCAAAGAGGAGAGATGCTTCAGATGTTAACCATGCTGCAACAGCTTCTTAA 645 0.4279 MQSLMLLSAIFLFQPILIRVAMDCEMVGVGSEGNKSALGRVTLVNKWGNVIYDEYVRPVEWVVDFRTEISGIRPRDLKKAKDFQTVQRQVAELIKGRLLVGHALRNDLKALLLSHPKVDMRDTSECELFLKEERRRVALRHLAAEFLGVKIQNGEHCPVEDARAAMLLYQRNRKQWEKNIKDQIRLRQKQKKRKQKKKPKRRDASDVNHAATAS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0178 214 SMART exoiiiendus 18 178 IPR013520 -
Vvi19g0178 214 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 20 190 IPR047021 GO:0004527
Vvi19g0178 214 Gene3D - 19 197 IPR036397 GO:0003676
Vvi19g0178 214 SUPERFAMILY Ribonuclease H-like 20 178 IPR012337 -
Vvi19g0178 214 Coils Coil 159 193 - -
Vvi19g0178 214 Pfam Exonuclease 20 169 IPR013520 -
Vvi19g0178 214 CDD REX4_like 20 170 IPR037431 GO:0006364|GO:0008408
Vvi19g0178 214 FunFam Interferon-stimulated exonuclease gene 20 17 188 - -
Vvi19g0178 214 MobiDBLite consensus disorder prediction 185 200 - -
Vvi19g0178 214 MobiDBLite consensus disorder prediction 180 214 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0178 20 193 C2H2 Transcription Factor Family AT3G27970 33.668 4.75e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0178 K18327 - vvi:100241776 358.992