Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0176 ATGGGTATAAATGCAATTCGTGGAGGTTATACAAGCAATGGAGCCAAGCAGTCTGTACTTCAAGTTGTGCTTGCGCATCGTCCACCGGGTGATGAGAGGTTGTCCAAAATAAGCAAACTGGCTGCACGTGCTGATCTACACCATTTAGGACTGTTCTTACAGGGGAGGCAAGCTGATGCTCCCCAAGAAGCTCTTCAGGTTCTTGACATTGTTTTGCGCGAGTTGCCTACAACTCGGTACTGTCCCGTGGGGGGATCATTTTATTCTCCAGATCTAGGGAGAAGGCAGCCATTGGGTGAGGGTTTGGAAAGTTGGCGTGGTTTCTATCAGAGTATTCGGCCAACTCAGATGGGACTGTCACTGAATATTGATATGTCCTCGACGGCTTTTATTGAGCCATTGCCTGTCATTGATTTTGTGACACAGCTTCTGAATCGGGATGTTTCTTCCCGACCATTATCTGATGCTGATCGTGTAAAGGTTAAGAAGGCTCTCAGAGGAGTCAAAGTTGAAGTTACTCATCGGGGAAATATGCGTAGAAAATATCGTATATCTGGCTTAACATCACAAGCAACACGTGAATTGACTTTTCCTGTTGATGATAGAGGAACCGTGAAATCTGTCTTTGAGTACTTCTATGAAACATATGGGTTTGTCATTCAGCATTCTCAATGGCCTTGTCTGCAAGTGGGAAATCAACAGAGGCCAAATTATTTGCCTATGGAGGTTTGCAAGATTGTTGAAGGCCAAAGATATTCCAAGAGGTTGAATGAGAGGCAGATTACTGCTTTACTGAAGGTGACTTGTCAACGTCCTCAAGAAAGGGAGCATGACATAATGCAGACGATTCACCATAATGCTTATCATGAGGATCCTTATGCTAAGGAGTTTGGTATCAAAATCAGTGAGAAGCTCGCTTCAGTTGAAGCTCGCATTTTACCTGCTCCATGGCTTAAATACCATGATACGGGAAGGGAAAAGGATTGTCTGCCTCAAGTTGGCCAGTGGAATATGATGAATAAGAAAATGGTCAATGGTGGAACTGTCAACAATTGGATTGGCATAAATTTTTCACGTGGAGTACAAGAGAGTGTGGCTCGTGGGTTCTGTCAGGAGTTTGCACAAATGTGTTATATTTCTGGCATGGCATTTAATCCGGAACCAGTACTTCCACCAATTACTGCACGTCCTGATCAGGTGGAGAGAGTTTTGAAGGCAAGGTTTCATGAAGCCATGACCAAACTCCAGCCACAGGGCAAGGAGCTTGATTTGCTTATTGTTATTTTGCCAGATAATAATGGTTCACTCTATGGTGATTTGAAACGAATCTGTGAGACAGATCTTGGGCTTGTTTCACAGTGTTGCTTACATAAACATGTGTATAGAATGAGTAAGCAATATCTGGCAAATGTGGCATTGAGGATTAATGTAAAGGTTGGAGGGAGAAATACGGTGCTTGTTGATGCAATATCAAGGCGCATACCTCTGGTCAGTGATCGGCCCACTATCATTTTTGGGGCTGATGTTACCCATCCTCACCCAGGAGAGGATTCAAGCCCATCTATTGTTGCTGTTGTCGCCTCTCAAGATTGGCCCGAGATTACAAAATATGCTGGTTTGGTTTGTGCTCAGGCCCACCGACAGGGGCTCATCCAAGATCTTTATAAGACTTGGCAGGATCCTGTAAGAGGAACTGTGTCTGGTGGAATGATCAAAGAACTGCTTATATCTTTCCGTAGAGCAACTGGGCAGAAACCTCAGCGCATAATATTCTATAGGGATGGGGTCAGTGAAGGGCAGTTCTATCAAGTCTTACTATATGAACTTGATGCTATTCGTAAGGCATGTGCATCTTTGGAGCCAAACTATCAGCCTCCTGTGACATTTGTTGTGGTTCAGAAACGCCATCATACTAGATTGTTTGCCAACAACCATAATGACCGGAATGCAGTTGACAAGAGTGGGAATATATTACCTGGTACTCCATGCTGGCATTCAGGGCACAAGCTGACCTGCCCATTACCACGTTTCACAGCTGATGGGCTGCAGTCCCTCACAAACAACCTCTGCTACACATATGCTAGGTGCACACGCTCTGTTTCCATCGTGCCCCCTGCATACTATGCTCATCTGGCTGCTTTCCGAGCACGCTTCTATATGGAGCCAGAGACATCAGATAGTGGGTCAATGACAAGCGGTGCTGCTGCTGGTCGTGGGGGCATGGGTGTTGGAGGACCAGGTCCTCGAAACACACGGGTATCAGGTGCTAATGCAGCCGTTAGACCCCTCCTGGCCCTCAAGGAGAATGTCAAGAGGGTCATGTTTTACTGTTAG 2334 0.4559 MGINAIRGGYTSNGAKQSVLQVVLAHRPPGDERLSKISKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGGSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKVKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDDRGTVKSVFEYFYETYGFVIQHSQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPQEREHDIMQTIHHNAYHEDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWIGINFSRGVQESVARGFCQEFAQMCYISGMAFNPEPVLPPITARPDQVERVLKARFHEAMTKLQPQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLHKHVYRMSKQYLANVALRINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIVAVVASQDWPEITKYAGLVCAQAHRQGLIQDLYKTWQDPVRGTVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDRNAVDKSGNILPGTPCWHSGHKLTCPLPRFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAAAGRGGMGVGGPGPRNTRVSGANAAVRPLLALKENVKRVMFYC* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0176 777 Gene3D paz domain 127 252 - -
Vvi19g0176 777 MobiDBLite consensus disorder prediction 729 750 - -
Vvi19g0176 777 Gene3D - 670 777 IPR036397 GO:0003676
Vvi19g0176 777 CDD PAZ_argonaute_like 133 247 - -
Vvi19g0176 777 SUPERFAMILY PAZ domain 128 288 IPR036085 GO:0005515
Vvi19g0176 777 Gene3D - 312 487 - -
Vvi19g0176 777 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 36 661 - -
Vvi19g0176 777 SMART DUF1785_2 81 133 IPR014811 -
Vvi19g0176 777 CDD Piwi_ago-like 292 720 IPR045246 -
Vvi19g0176 777 SMART Piwi_a_2 424 721 IPR003165 GO:0003676
Vvi19g0176 777 Pfam Mid domain of argonaute 331 405 IPR032473 -
Vvi19g0176 777 SMART PAZ_2_a_3 138 270 IPR003100 GO:0005515
Vvi19g0176 777 Pfam Piwi domain 425 661 IPR003165 GO:0003676
Vvi19g0176 777 Pfam Piwi domain 676 720 IPR003165 GO:0003676
Vvi19g0176 777 FunFam Protein argonaute-2 127 253 - -
Vvi19g0176 777 ProSiteProfiles PAZ domain profile. 134 248 IPR003100 GO:0005515
Vvi19g0176 777 Pfam Argonaute linker 2 domain 274 320 IPR032472 -
Vvi19g0176 777 Gene3D - 494 666 IPR036397 GO:0003676
Vvi19g0176 777 FunFam Argonaute 10 312 487 - -
Vvi19g0176 777 SUPERFAMILY Ribonuclease H-like 419 721 IPR012337 -
Vvi19g0176 777 Pfam Argonaute linker 1 domain 82 132 IPR014811 -
Vvi19g0176 777 Pfam PAZ domain 138 263 IPR003100 GO:0005515
Vvi19g0176 777 ProSiteProfiles Piwi domain profile. 424 721 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0176 Vvi-Chr19 2025039 2028504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0176 37 777 Eukaryotic Initiation Factors Gene Family AT1G48410 79.531 0.0 1256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0176 K11593 - vvi:100253740 1439.48