Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0175 ATGGCCTGGGTGCTGTTGCTCTCACCAGCAGCAGCAGCAGCTGATCATGGAGGCACCAGCCACAGCGATGGCAGTATAGGAGTCATCGTTGATTATGGTTCCCGTGTCGGCAAAGAAGAGAAAGTAGCAATGGAGTTGGCCATTGATGATTTCTACAAGAAGACAAATCAACGATTGGTTTTGCATTCGAGAGACTCTCAAGGCGATCCTCTTCGTGCGAGGCTTTCAGCCATGGACCTCATTGAGAAGCAGCAAGTGCAGGCCATTGTAGGCCTTCATACTTGGGAGGAGGTGTCTTTAGTCGCAGAAGTTGGTGGCCAAGCTCGTATTCCTATTCTTTCACTGGCTGATTCAACTCCCAAATGGGCAACAGATCGGTGGCCATTCCTGGTTCAAGCCTCACCAAGTAGATACTTGCAAATGAACGCAGTGGCTGCCATTGTTGGGTCCTGGCAATGGCGTTGGATCACTGTAATATATGAGGACACTGACTCTGCAGCCACTGATATCATTCCATGTCTTGTCGATGCCCTCAAGCAAGTGGGTTCAGAAATTGGCTACCTTCTGGCTCTTCCACCATTTACTGTCAATTCCTCTTCTCCTTTATCAGGTGAGCTTGAGGGACTTAAAGGAAGGCAATCAAGAGTCTTTGTGCTTCATTCCTCTTTATCAATGGCAGCACATCTATTTGAAACAGCTAATGAATTGGGCATGATGGAAGAGGGATATGTTTGGATCATTACAGACAGAACTACAAATCTTATACATTCCATGAATTCTGCAACCATCTCATCAATGCAAGGCATTCTAGGAGTGAGGAGCTACTTCTCTCAAAGTGGACCACGGTTCCAAGGTTTCTATCTCAGATTCAGAGAGAAGTTTCATTCCTTGTATCCCAAGGAAGACAACCATGAGCCTGGTATTTTCGCTCTGCAGGCATATGATGCTGTATGGTCTGTGGCTCTTGCAATGGAGACAGCTCCAAGCAGCAAAAAAGGGTTAATCCAACCATTTTTAGAAAGAATAGCAATCAGTGATTTCCATGGCCTAAATAGTAGAATCCAATTCAACAGGAGAAGCTTGGCTCCACAGCGCATCTTTCAGATTATTAATGTGATTGGAAAGAGTTACAGAGAACTCGGGTTCTGGTTCGAGGGATCAGGTTTCTCCAAGACTACCAATGAGAAATCTACATACAGTAGGCAGCTTCAAGTCCTTGGACAAGTGCTGTGGCCAGGAGGCCCTTGGTCTGTTCCAAGAGGATGGTCTCTTCCAACAAGCCAAAAACCATTGCGGATCGGTGTCCCCCAACATGGAACATTCAAACAGTTCGTTAATGTGACATATGATGGAAGCCATTATTCTGTTACCGGATTCTCCATCGAGGTTTTCAATGCAACTCTAGAACACCTGAAATACCATTTAACATATGAGCTCATTCCTTACAGTGGCAACTTTGATTCATTGGTGGAGCAGGTTCATCTCAAATTTACATCTTTGGTCACCACAGGGGAGAAGTTGCATAGCAATTTATCAAGGTTGTCCATGGTGGTTTGGCTGTTTGTGGCACTGGTCATAACACAAAGCTACACAGCCAATCTCAGCACCCTGCTCACTGTCCAGCAGCTCAAACCCAGTGTCAAGTCCCTCAAGGATAACAATTTTGTGGTTGGTTGCAGCTTCCGGTCCTTTATCCCAAAATATCTGGAGGAAGTCCTGGGAATAGACCCGAAAAACATGAAAGATATTAGGTCATTCGAAGAATATCCTCAAGCTTTTAGAAGGGGAGAGATAGCAGCTACCTTCATGGAATCCTTGTACGCAGAAGTGTTTCTTGCCCAGTACTGCAAGGGCTTTGTTACTGTTGGGCCAACATTCAGAGTTGGAGGCTTAGGCTTTGTGTTTCCAAAGGGTTCAACTATACTTCCAGACATCTCAGAAGCGGTGGTGAAATTGTATGAAAAGGGCGAGATAATGTACTTACGTAACAAGTTGGTCCACTCCCAGAAATGCTTGGAAGTGGAAGCTGAAGATGATCACAGCATTAGCCCAGACAGCCTTTGGGTGCTCTTCTTAGCAACAGGAGCTACATCAACAGTTTCGCTGGCAATCTATGTGGCAGGTCAGATGCAGCATTTCCAGGATTTTATGTTGGAAAACATAGGTATTTGGAGGCTGATATCTGCAGCAATGAGATCCTGGATGCATCACCATGCACAACGAACACAATTCTCTGGTGGAGACCTCAAAAGAACCAGTTCTCTAGTAGAGTTAGGGACATACAGAGGAAGCCATGGAAATGTCTGA 2307 0.4543 MAWVLLLSPAAAAADHGGTSHSDGSIGVIVDYGSRVGKEEKVAMELAIDDFYKKTNQRLVLHSRDSQGDPLRARLSAMDLIEKQQVQAIVGLHTWEEVSLVAEVGGQARIPILSLADSTPKWATDRWPFLVQASPSRYLQMNAVAAIVGSWQWRWITVIYEDTDSAATDIIPCLVDALKQVGSEIGYLLALPPFTVNSSSPLSGELEGLKGRQSRVFVLHSSLSMAAHLFETANELGMMEEGYVWIITDRTTNLIHSMNSATISSMQGILGVRSYFSQSGPRFQGFYLRFREKFHSLYPKEDNHEPGIFALQAYDAVWSVALAMETAPSSKKGLIQPFLERIAISDFHGLNSRIQFNRRSLAPQRIFQIINVIGKSYRELGFWFEGSGFSKTTNEKSTYSRQLQVLGQVLWPGGPWSVPRGWSLPTSQKPLRIGVPQHGTFKQFVNVTYDGSHYSVTGFSIEVFNATLEHLKYHLTYELIPYSGNFDSLVEQVHLKFTSLVTTGEKLHSNLSRLSMVVWLFVALVITQSYTANLSTLLTVQQLKPSVKSLKDNNFVVGCSFRSFIPKYLEEVLGIDPKNMKDIRSFEEYPQAFRRGEIAATFMESLYAEVFLAQYCKGFVTVGPTFRVGGLGFVFPKGSTILPDISEAVVKLYEKGEIMYLRNKLVHSQKCLEVEAEDDHSISPDSLWVLFLATGATSTVSLAIYVAGQMQHFQDFMLENIGIWRLISAAMRSWMHHHAQRTQFSGGDLKRTSSLVELGTYRGSHGNV* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0175 768 Gene3D - 597 631 - -
Vvi19g0175 768 CDD GluR_Plant 429 664 - -
Vvi19g0175 768 FunFam Glutamate receptor 140 304 - -
Vvi19g0175 768 CDD PBP1_GABAb_receptor_plant 25 391 IPR044440 -
Vvi19g0175 768 Gene3D - 136 385 - -
Vvi19g0175 768 Pfam Bacterial extracellular solute-binding proteins, family 3 449 664 IPR001638 -
Vvi19g0175 768 Gene3D - 632 664 - -
Vvi19g0175 768 Gene3D - 33 364 - -
Vvi19g0175 768 Pfam Ligand-gated ion channel 665 696 IPR001320 GO:0015276|GO:0016020
Vvi19g0175 768 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 25 498 IPR015683 -
Vvi19g0175 768 SUPERFAMILY Periplasmic binding protein-like II 403 664 - -
Vvi19g0175 768 Gene3D - 456 570 - -
Vvi19g0175 768 FunFam Glutamate receptor 461 578 - -
Vvi19g0175 768 PIRSF IGluLR_plant 495 759 IPR017103 -
Vvi19g0175 768 PIRSF IGluLR_plant 1 501 IPR017103 -
Vvi19g0175 768 SMART GluR_14 432 668 IPR001320 GO:0015276|GO:0016020
Vvi19g0175 768 Pfam Receptor family ligand binding region 41 373 IPR001828 -
Vvi19g0175 768 SUPERFAMILY Periplasmic binding protein-like I 26 422 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0175 Vvi-Chr19 2019315 2022483 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0175 505 706 Ion Channels AT5G27100 34.404 1.30e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0175 - - vvi:100243505 994.186